BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0132.p
         (381 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311204|ref|YP_003775296.1| lysophospholipase L1 biosynthes...   449   e-127

>gi|300311204|ref|YP_003775296.1| lysophospholipase L1 biosynthesis
           ABC transporter permease [Herbaspirillum seropedicae
           SmR1]
          Length = 832

 Score =  449 bits (1156), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/266 (88%), Positives = 253/266 (95%)

Query: 1   MFQQALRMTLRDWRTGELRFLLIALIVAVAALSSVGFFVDRMRAGMTRDAHQLLGADLLV 60
           MFQQALRMT RDWRTGELRFLLIALIVAVA+LSSVGFFVDRMRAGMTRDAHQLLGADLLV
Sbjct: 1   MFQQALRMTWRDWRTGELRFLLIALIVAVASLSSVGFFVDRMRAGMTRDAHQLLGADLLV 60

Query: 61  AADQPLSPQWLQQAATQNLQQAQTQVFPSMAQAGEGDAARSVLSSIKAVTAGYPLRGQLR 120
           AADQPL PQW+Q+AA Q LQQAQTQVFPSMAQAGEGDAAR+VL+SIKAVTAGYPLRGQLR
Sbjct: 61  AADQPLPPQWMQRAAAQGLQQAQTQVFPSMAQAGEGDAARAVLASIKAVTAGYPLRGQLR 120

Query: 121 LQGSDGRDRPANGIPQPGTIWVDPQILSQLDVKVGDTLRLGDLALKIAAVIAIEPDRGSA 180
           LQ + G DRPA GIPQPGT+WVDPQILSQLDV+VGDTL+LGDL LKIAAVIA+EPDRGSA
Sbjct: 121 LQTASGADRPAEGIPQPGTVWVDPQILSQLDVRVGDTLKLGDLPLKIAAVIAVEPDRGSA 180

Query: 181 FVNFAPRVMLNEADLAATHLVQVGSRVTYRLLIAGPPEAVQRYQQQIERQIDADKLRGVR 240
           FVNFAPRVML EADLAATHLVQVGSRVTYRLL+AGP   V+++QQ++ERQI+ADKLRGVR
Sbjct: 181 FVNFAPRVMLGEADLAATHLVQVGSRVTYRLLLAGPAPVVKQFQQELERQIEADKLRGVR 240

Query: 241 LESLENGRPEMRATLDRAEQFLSLVG 266
           LESLENGRPEMRATLDRAEQFLSLVG
Sbjct: 241 LESLENGRPEMRATLDRAEQFLSLVG 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,009,945
Number of extensions: 37624
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,207,925
Effective search space: 355129950
Effective search space used: 355129950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)