BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0131.p
         (506 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311204|ref|YP_003775296.1| lysophospholipase L1 biosynthes...   662   0.0  

>gi|300311204|ref|YP_003775296.1| lysophospholipase L1 biosynthesis
           ABC transporter permease [Herbaspirillum seropedicae
           SmR1]
          Length = 832

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/376 (92%), Positives = 360/376 (95%)

Query: 1   VIRRDQGAPQALTVGTYVLGTLVFSGLLLWQAGDLKLGLLTIAGFLGGFGLFALVAWLCL 60
           VIRRDQ  PQ LTV TY LGTLVFSGLLLWQAGDLKLGLLTIAGFLGGFGLFALVAWLCL
Sbjct: 385 VIRRDQLTPQPLTVATYGLGTLVFSGLLLWQAGDLKLGLLTIAGFLGGFGLFALVAWLCL 444

Query: 61  RALRSLRGLVDRQSWRFAIDGLQRRPAAAVMQVVALGLGLMALLLLTVIRGDLVGAWRQA 120
           RALRSLRGLVDRQSWRFAIDGLQRRPAAAVMQVVALGLGLMALLLLTVIRGDLVGAWRQA
Sbjct: 445 RALRSLRGLVDRQSWRFAIDGLQRRPAAAVMQVVALGLGLMALLLLTVIRGDLVGAWRQA 504

Query: 121 TPADAPNRFIINIQPDQREAVQQALRQGGVQDAALYPMIRGRLVQINGRAVNPSDYQEDR 180
           TPADAPNRFIINIQPDQR+AV+Q LRQGGV D ALYPMIRGRLVQINGRA++ +DY EDR
Sbjct: 505 TPADAPNRFIINIQPDQRQAVEQLLRQGGVGDVALYPMIRGRLVQINGRAISAADYAEDR 564

Query: 181 AKRLVDREFNLSTMRDIPPGNGIVGGRWYDDSRPEASVERGLAQTLGIKLGDKLQFDIAG 240
           AKRLVDREFNLST+R+IPPGNGIV GRWYDD +PEASVERGLAQTLGIKLGD+LQFDIAG
Sbjct: 565 AKRLVDREFNLSTLREIPPGNGIVAGRWYDDRQPEASVERGLAQTLGIKLGDRLQFDIAG 624

Query: 241 QLVEAPVTSLRKLEWGSLRVNFFVILNPTLMRDTPQSWITAVHLTPQQEALGNTLARDFP 300
           QLVEAPVTSLRKLEWGSLRVNFFVILNPTLMRDTPQSWITAVHL PQQEALGNTL RD+P
Sbjct: 625 QLVEAPVTSLRKLEWGSLRVNFFVILNPTLMRDTPQSWITAVHLNPQQEALGNTLTRDYP 684

Query: 301 NLTVVDIGSVLAQIQEVVGQVIAAVEFLFLFTLCSGVLVLYAALAGSQDERVREAGLLRA 360
           NLTVVDIGSVL QIQ+VVGQVI+AVEFLFLFTLCSGVLVLYAALAGSQDERVREAGLLRA
Sbjct: 685 NLTVVDIGSVLRQIQDVVGQVISAVEFLFLFTLCSGVLVLYAALAGSQDERVREAGLLRA 744

Query: 361 LGATRQELSRAQRIEV 376
           LGATR EL+RAQRIEV
Sbjct: 745 LGATRVELARAQRIEV 760


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,247,809
Number of extensions: 46452
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 417
Effective length of database: 1,198,455
Effective search space: 499755735
Effective search space used: 499755735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)