BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0130.p
         (110 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311205|ref|YP_003775297.1| oxygen-binding protein [Herbasp...   228   8e-62
gi|300312163|ref|YP_003776255.1| oxygen-binding protein [Herbasp...   113   4e-27

>gi|300311205|ref|YP_003775297.1| oxygen-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 133

 Score =  228 bits (581), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 1   MVDRFYDLMDLEPEFAGIRALHPPSLDGSREKTYMFLSGWTGGPSLYMEKFGHPRLRARH 60
           MVDRFYDLMDLEPEFAGIRALHPPSL+GSREKTYMFLSGWTGGPSLYMEKFGHPRLRARH
Sbjct: 24  MVDRFYDLMDLEPEFAGIRALHPPSLEGSREKTYMFLSGWTGGPSLYMEKFGHPRLRARH 83

Query: 61  LPFPIGISERDQWLRCMTWAMQDVGLPEDLMKRLLAALYQTADWMRNKPE 110
           LPFPIGISERDQWLRCMTWAMQDVGLPEDLMKRLLAALYQTADWMRNKPE
Sbjct: 84  LPFPIGISERDQWLRCMTWAMQDVGLPEDLMKRLLAALYQTADWMRNKPE 133


>gi|300312163|ref|YP_003776255.1| oxygen-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 134

 Score =  113 bits (282), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 74/108 (68%)

Query: 1   MVDRFYDLMDLEPEFAGIRALHPPSLDGSREKTYMFLSGWTGGPSLYMEKFGHPRLRARH 60
           +VDRFY LMD  P+ A +RA+HP  L  ++++ +MFLSGW GGP LY E FGHPRLR  H
Sbjct: 27  LVDRFYALMDQLPQAAVVRAMHPGDLTPAKQRLFMFLSGWLGGPPLYAEAFGHPRLRHAH 86

Query: 61  LPFPIGISERDQWLRCMTWAMQDVGLPEDLMKRLLAALYQTADWMRNK 108
             F +  + RD W+ CM  A+Q++   E L ++L AA ++TAD++ N+
Sbjct: 87  AGFAVDAAARDAWMACMNQALQELVPDEVLRQQLGAAFFKTADFLCNQ 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 430,565
Number of extensions: 18573
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 37
Effective length of database: 1,274,215
Effective search space: 47145955
Effective search space used: 47145955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 124 (52.4 bits)