BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0128.p
         (431 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   781   0.0  
gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   263   2e-71

>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/424 (90%), Positives = 405/424 (95%)

Query: 8   TLHDIVSCISGYDPNAMTVARAQAVIQEFITPVEAVEKLAIRSALSRVLARDIISRIDVP 67
           +L+DIVSCISGYDP+AMTV RAQAVI+EFI P+EAVEKL IRSALSRVLA+DI+SRIDVP
Sbjct: 5   SLNDIVSCISGYDPHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSRIDVP 64

Query: 68  AHDNSAMDGYALRGEDVAEGQQVRLQIIGAVHAGEQFAGSVGPGQCVRIMTGAPMPDGCD 127
           AHDNSAMDGYALRGED+AEG+++RLQIIG VHAG++F G VGPGQCVRIMTGAPMP GCD
Sbjct: 65  AHDNSAMDGYALRGEDLAEGRELRLQIIGEVHAGDRFTGQVGPGQCVRIMTGAPMPAGCD 124

Query: 128 TVIPQELTTDADAQGVTLPAGRVRPGDNRRLRGEDLALGSVALPRGRVLRPSDIGLLASL 187
           TVIPQELT DAD   VT+P GRVR GDNRRLRGEDLALGSVALPRGR+LRPSDIGLLASL
Sbjct: 125 TVIPQELTVDADQSAVTVPPGRVRAGDNRRLRGEDLALGSVALPRGRILRPSDIGLLASL 184

Query: 188 GIAEVPVQRRLRVAFFSTGDELRSVGEPLDAGCVYDSNRYTLHGMLTRLGCEVLDMGVVP 247
           G+AE PVQRRLRVAFFSTGDELRSVGEPLD GCVYDSNRYTLHGMLTRLGCEVLDMGVVP
Sbjct: 185 GLAEAPVQRRLRVAFFSTGDELRSVGEPLDEGCVYDSNRYTLHGMLTRLGCEVLDMGVVP 244

Query: 248 DDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMTFWKIAMRPGRPLAFG 307
           DDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEM FWKIAMRPGRPLAFG
Sbjct: 245 DDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGRPLAFG 304

Query: 308 RIRSRGREAYLFGLPGNPVAVQVSFSFFVRDALLRLAGAEANPLPRLRVKTATAIRKKAG 367
           RIRSRGREAYLFGLPGNPVAV VSFSFFVRDALLRLAGAEA PLPRLRVKTATAIRKKAG
Sbjct: 305 RIRSRGREAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLPRLRVKTATAIRKKAG 364

Query: 368 RTEYQRGILAPDENGHWQVRLTGMQGSGILRSMSDANCIIELEHDRGEVAAGEEVAVVLF 427
           RTEYQRGILAPD++G+W VRLTGMQGSGILRSMSDANCIIELEHDRG+VAAGEEVAVVLF
Sbjct: 365 RTEYQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVAVVLF 424

Query: 428 DGLV 431
           DGLV
Sbjct: 425 DGLV 428


>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  263 bits (672), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 182/432 (42%), Positives = 241/432 (55%), Gaps = 31/432 (7%)

Query: 17  SGYDPNAMTVARA--QAVIQEFIT------PVEAVEKLAIRSALSRVLARDIISRIDVPA 68
           S   P++   ARA  Q+V Q   T      PV   E +    A  RVLA  + + IDVP 
Sbjct: 7   SSTPPSSAKPARAPMQSVSQALETLLSAAVPVAQREIIDTLDACERVLAEPVTASIDVPG 66

Query: 69  HDNSAMDGYALRGEDVAEGQQVRLQIIGAVHAGEQFAGSVGPGQCVRIMTGAPMPDGCDT 128
            DNS MDGYA+R  D A GQ  RL++   + AG      + PG   RI TGA MP G D 
Sbjct: 67  MDNSQMDGYAVRAADCASGQ-ARLRVSQRIPAG-HVGQPLEPGTAARIFTGAMMPAGADA 124

Query: 129 VIPQELTTDADAQGVTL---PAGRVRPGDNRRLRGEDLALGSVALPRGRVLRPSDIGLLA 185
           V+ QE   +AD + V +   PA     G+  R  GED+  GS  L  G  LRP ++GL A
Sbjct: 125 VVMQE-ACEADGEHVVIRHVPAA----GEWVRTIGEDIRQGSTILAAGTRLRPQELGLAA 179

Query: 186 SLGIAEVPVQRRLRVAFFSTGDELRSVGEPLDAGCVYDSNRYTLHGMLTRLGCEVLDMGV 245
           S+G A++ V RR+RVA F TGDEL   G+PL  G +Y+SNR+ L G+L +LGC+V D G+
Sbjct: 180 SIGQAQLQVLRRVRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGI 239

Query: 246 VPDDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMTFWKIAMRPGRPLA 305
           VPD   A     R A  E D +ITSGGVSVG  D+ K  + + G +  W+IAM+PG+PLA
Sbjct: 240 VPDSLQATRETLREAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLA 299

Query: 306 FGRIRSRGR---EAYLFGLPGNPVAVQVSFSFFVRDALLRLAGAEANPLPRLRV-KTATA 361
           FG++R RG    EA+  GLPGNPV+  V+F  FVR  LLRL G     LPR  V   A A
Sbjct: 300 FGQVR-RGEGTGEAFFMGLPGNPVSSFVTFLLFVRPFLLRLQG-----LPREAVLPQAVA 353

Query: 362 IRKKAG--RTEYQRGILAPDENGHWQVRLTGMQGSGILRSMSDANCIIELEHDRGEVAAG 419
           +R      R + ++  L    N    + L   QGS +L S + A+ +I+    +  +AAG
Sbjct: 354 LRADFDWPRADRRQEFLRVRRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQ-TIAAG 412

Query: 420 EEVAVVLFDGLV 431
           + V  + FD L+
Sbjct: 413 DMVQFLAFDHLL 424


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,392,020
Number of extensions: 63736
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,203,190
Effective search space: 412694170
Effective search space used: 412694170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)