BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0126.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesi...   679   0.0  
gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesi...   220   1e-58

>gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesis
           protein A [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/371 (91%), Positives = 353/371 (95%)

Query: 1   MNKRVIPIVDVRQAPSASAAGLLTPVAVEPTGWLGDNLGRPLHDLRISVTDRCNFRCVYC 60
           MN+RVIPIVD RQA  AS AG L P+AV+PTGWL D+LGRPLHDLRISVTDRCNFRCVYC
Sbjct: 23  MNQRVIPIVDYRQAFPASEAGRLAPMAVQPTGWLSDSLGRPLHDLRISVTDRCNFRCVYC 82

Query: 61  MPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVAHGVRKIRLTGGEPLLRKNIETLIAMLA 120
           MPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVAHGVRKIRLTGGEPLLRKNIETLI MLA
Sbjct: 83  MPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVAHGVRKIRLTGGEPLLRKNIETLIGMLA 142

Query: 121 ALRTPDGEEIDLTLTTNGTLLKQKAQALKAAGLRRVTVSLDSLDDESFRRMNDVDFPVAR 180
           ALRTP+ E +DLTLTTNGTLLKQKAQALK AGL+RVTVSLDSLDDE FRRMNDVDFPVAR
Sbjct: 143 ALRTPEDEPVDLTLTTNGTLLKQKAQALKDAGLKRVTVSLDSLDDEGFRRMNDVDFPVAR 202

Query: 181 VLEGIEAAHAAGLGPIKINMVVKKGVNDDQILPMARYFKGSPAILRFIEYMDVGSSNGWR 240
           VLEGI+AAHAAGLGP+KINMVVKKGVNDDQILPMARYFKG+PAILRFIEYMDVGSSNGWR
Sbjct: 203 VLEGIDAAHAAGLGPVKINMVVKKGVNDDQILPMARYFKGTPAILRFIEYMDVGSSNGWR 262

Query: 241 MDEVLPSREVVRRIAAEMPLEVADPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSR 300
           MDEVLPS EVVR IA EMPLEVADPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSR
Sbjct: 263 MDEVLPSAEVVRLIATEMPLEVADPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSR 322

Query: 301 ARLSTEGKVYTCLFASEGHDLRSLVRNGSSDAEIAGAIAALWGQRGDRYSELRSALQAAP 360
           ARLSTEG+VYTCLFASEGHDLRS+VR+G SDAEIAGAIAALWGQRGDRYSELRSAL+ AP
Sbjct: 323 ARLSTEGRVYTCLFASEGHDLRSIVRSGGSDAEIAGAIAALWGQRGDRYSELRSALREAP 382

Query: 361 ARKVEMSYIGG 371
            RKVEMSYIGG
Sbjct: 383 LRKVEMSYIGG 393


>gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesis
           enzyme A protein [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  220 bits (561), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 141/353 (39%), Positives = 194/353 (54%), Gaps = 31/353 (8%)

Query: 27  AVEPTGWLGDNLGRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLTFEELTR 86
           +  P   L D  GR +  LRISVTDRC+ RC YC+PK        F    + L F+E++R
Sbjct: 4   STHPPAVLQDRFGRRISYLRISVTDRCDLRCSYCLPKG----HTGFEEPQNWLRFDEISR 59

Query: 87  VAAQFVAHGVRKIRLTGGEPLLRKNIETLIAMLAALRTPDGEEIDLTLTTNGTLLKQKAQ 146
           V A F   G  ++RLTGGEPLLR+ + TL A L+AL   D    +L+L+TN T L + A 
Sbjct: 60  VVAAFARLGAGRVRLTGGEPLLRRGLATLAAQLSALPGVD----ELSLSTNATQLHKHAA 115

Query: 147 ALKAAGLRRVTVSLDSLDDESFRRMNDVDFPVARVLEGIEAAHAAGLGPIKINMVVKKGV 206
           +L+AAG++R+ VSLDSLD      +   D  +A V+ G+EAA AAG  PIKINMV+ +GV
Sbjct: 116 SLRAAGVQRINVSLDSLDRACSASITGRD-SLASVMSGLEAAKAAGFAPIKINMVLLRGV 174

Query: 207 NDDQILPMARYFKGSPAILRFIEYMDVGSSNGWR-------MDEVLPSREVVRRIAAEMP 259
           N+ ++  MA++      ILR IE M +G++           + E L +R  +R +AAE+ 
Sbjct: 175 NEQEVPQMAQFCFEHGFILRLIETMPMGATGRSSPALELGPLREALVARFGLRPLAAEL- 233

Query: 260 LEVADPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSRARLSTEGKVYTCLFASEGH 319
                    G  A  W   DG   IG IS ++Q FC  C+R RLS +G +Y CL   E  
Sbjct: 234 --------GGGPARYWSTPDGRSTIGFISPISQHFCATCNRVRLSVDGTLYLCLGQEERF 285

Query: 320 DLRSLVRNGSSDAEIAGAIAALWGQRGDRYSELRSALQAAPARKVE-MSYIGG 371
           +LR L+R G  DA +  AI A    + +R+         AP + V  MS  GG
Sbjct: 286 ELRPLLRAGIDDAGLESAIRAAIELKPERHE-----FNEAPQKIVRFMSQTGG 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,139,814
Number of extensions: 46711
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)