BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0123.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311212|ref|YP_003775304.1| phosphoglycolate phosphatase [H...   442   e-126
gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...    57   1e-09

>gi|300311212|ref|YP_003775304.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  442 bits (1138), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/219 (96%), Positives = 216/219 (98%)

Query: 1   MARKQFDLIVFDWDGTLMDSTSTIVRCIQAAARDLGLPIPDKSAASYVIGLGLQDAMQAA 60
           MARKQFDLIVFDWDGTLMDSTSTIVRCIQAAARDLGLPIPDKSAASYVIGLGLQDAMQAA
Sbjct: 1   MARKQFDLIVFDWDGTLMDSTSTIVRCIQAAARDLGLPIPDKSAASYVIGLGLQDAMQAA 60

Query: 61  IPDVDPKYYPRIVERYRHHYLGQDKDLTLFEGVPEMLADLSQQGYFLAVATGKSRVGLNR 120
           IPDVDPKYYPRIVERYRHHYLGQDKDLTLFEGVPEMLADLSQQGYFLAVATGKSRVGLNR
Sbjct: 61  IPDVDPKYYPRIVERYRHHYLGQDKDLTLFEGVPEMLADLSQQGYFLAVATGKSRVGLNR 120

Query: 121 AMNSTGLLSKFDATRCADETFSKPHPAMLQELTRELGQDMHRTVMIGDTTHDLQMAINAG 180
           AMN+TGLLS FDA+RCADETFSKPHPAMLQELTRELGQDMHRT+MIGDTTHDLQMAINAG
Sbjct: 121 AMNTTGLLSMFDASRCADETFSKPHPAMLQELTRELGQDMHRTLMIGDTTHDLQMAINAG 180

Query: 181 AKGVAVEFGAHPPQQLQTLAPLYSARSIRELHQWLNDHA 219
           A GVAVEFGAHPPQQLQTL+PLYSARSIRELHQWL DHA
Sbjct: 181 AAGVAVEFGAHPPQQLQTLSPLYSARSIRELHQWLCDHA 219


>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 10  VFDWDGTLMDSTSTIVRCIQAAARDLGL-PIPDKSAASYVIGLGLQDAMQAAIP-----D 63
           + D DGT++D+ +     +     DLGL P+  ++  ++V G G ++ ++  +      D
Sbjct: 11  IIDLDGTMLDTAADFHVAVNRMRDDLGLTPLSQETIVNFV-GKGTENLIRRVLAVDYAED 69

Query: 64  VDPKYYPRIVERYRHHYLGQDKDLT-LFEGVPEMLADLSQQGYFLAVATGKSRVGLNRAM 122
              +Y+ + +     HYL  + D + L+ GV E L  L  +G  LA  T K        +
Sbjct: 70  EAAQYFQQALAACTEHYLAINGDYSSLYPGVLEGLQALRNKGLRLACVTNKPLAFAVPLL 129

Query: 123 NSTGLLSKFDATRCADETF--SKPHPAMLQELTRELGQDMHRTVMIGDTTHDLQMAINAG 180
              GL   F+     D +F   KP P  L ++ ++      + V IGD+++D Q A  AG
Sbjct: 130 QKKGLRDFFEIVYGGD-SFPKKKPDPMPLLQVCQDFALAPAQVVAIGDSSNDAQAARAAG 188

Query: 181 AKGVAVEFG 189
            + + V +G
Sbjct: 189 CRVLNVPYG 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 697,496
Number of extensions: 28868
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 3
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)