BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0121.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311214|ref|YP_003775306.1| periplasmic serine protease [He...   631   0.0  

>gi|300311214|ref|YP_003775306.1| periplasmic serine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  631 bits (1628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/352 (88%), Positives = 330/352 (93%), Gaps = 9/352 (2%)

Query: 12  MSNNESDNPQDRPPQSSSSSPASPPPAAPSSSIPASVREDKKSGWERDVLEKLALFAVKE 71
           MSNNES++P+        S P S PPA PSSSIPASVR+DKKSGWERDVLEKLALFAVKE
Sbjct: 1   MSNNESEHPE--------SQPQSTPPA-PSSSIPASVRDDKKSGWERDVLEKLALFAVKE 51

Query: 72  QRARRRWGIFFRIAILVVIVLGGWMAFTYNKIESEPLGTHTALVEIRGTIESEGQGSAGV 131
           QRARRRWG+FFRIA+L V+VLG WMAFT+N+IE+EPLG HTALVEI+G I+SEGQGSAGV
Sbjct: 52  QRARRRWGVFFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSAGV 111

Query: 132 VIPALDKAFAASDSVGVILKINSPGGSPVQAGMINDEITRLRKAYPKKPIYVVVEEMCAS 191
           VIPALDKAFAA+DSVGVILKINSPGGSPVQAGMINDEITRLRK YPKKPIYVVVEE+CAS
Sbjct: 112 VIPALDKAFAANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCAS 171

Query: 192 GGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSP 251
           GGYYIA AADKI+VNKASL+GSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSP
Sbjct: 172 GGYYIAAAADKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSP 231

Query: 252 QSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLKETPDTFSGLVWTGSKAVELGLADGYGT 311
           QSPKQREYAQSMLQEIHQQFIEVVRQGRG RLKETPDTFSGLVWTGSKAVELGLADG+GT
Sbjct: 232 QSPKQREYAQSMLQEIHQQFIEVVRQGRGARLKETPDTFSGLVWTGSKAVELGLADGFGT 291

Query: 312 VDSVARDVIKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKTLMSAPLSQLR 363
           VDSVARD IKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKT+MS+ L QLR
Sbjct: 292 VDSVARDEIKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKTVMSSSLPQLR 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,075,739
Number of extensions: 45210
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 131 (55.1 bits)