BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0115.p
         (113 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311220|ref|YP_003775312.1| nitrogen regulatory P-II protei...   152   7e-39
gi|300309430|ref|YP_003773522.1| nitrogen regulatory PII-like pr...   144   2e-36

>gi|300311220|ref|YP_003775312.1| nitrogen regulatory P-II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  152 bits (384), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 93/104 (89%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDXRRKALRVWQAVAARC 104
           IEVVVDDKVVEQAVDAIIKAARTGKIGD +     V Q +  R 
Sbjct: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRT 104


>gi|300309430|ref|YP_003773522.1| nitrogen regulatory PII-like
          protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  144 bits (363), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 80/90 (88%)

Query: 1  MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
          MK +TAIIKPFKLDEVRE+L+ +GV G+TVTEVKGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1  MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61 IEVVVDDKVVEQAVDAIIKAARTGKIGDXR 90
          IE  VDD +VE+A++AI  AARTGKIGD +
Sbjct: 61 IEAAVDDAIVERALEAIETAARTGKIGDGK 90


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 222,807
Number of extensions: 4562
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 40
Effective length of database: 1,274,215
Effective search space: 50968600
Effective search space used: 50968600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)