BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0110.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311224|ref|YP_003775316.1| DNA repair photolyase [Herbaspi...   730   0.0  

>gi|300311224|ref|YP_003775316.1| DNA repair photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/421 (86%), Positives = 384/421 (91%), Gaps = 5/421 (1%)

Query: 1   VASFPKFPQGIARPFPEQPTRSAASGEDDATLTPETFIHRDQTAQKGRGAVTNLRGRYES 60
           +ASFPKFPQGIA+PFP QP   A + EDD TLTP TFIHR Q AQKGRGAVTNLRGRYES
Sbjct: 1   MASFPKFPQGIAQPFPTQP---APTAEDDPTLTPATFIHRSQVAQKGRGAVTNLRGRYES 57

Query: 61  VAREEFDDGWQSVRFAEGRPQAAESPEEDEPPRLKTIVTEEDARSIITRNSSPDLPFSLS 120
           V+REEFDDGWQ +R+AEG   AA   +++EP RLKTIVTEE A+SII+RN+SPDLPFSLS
Sbjct: 58  VSREEFDDGWQPMRWAEGEGAAALE-QDEEPARLKTIVTEETAKSIISRNTSPDLPFSLS 116

Query: 121 LNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKRNAPEVLLRELAKPSYEPDTIT 180
           LNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAK NAPE+LLRELAKPSY+PDTIT
Sbjct: 117 LNPYRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELAKPSYQPDTIT 176

Query: 181 VGINTDAYQPIERERQLTRRILQILHDCENPVALITKSSLVERDIDLLAPMAAKGQAIVA 240
           VGINTDAYQPIERERQLTRRILQILHDCENPVA+ITKS+L+ERDIDLLA MAAK QAIVA
Sbjct: 177 VGINTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDIDLLAAMAAKDQAIVA 236

Query: 241 VTITTLDATIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEA 300
           VTITTLD  IARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEA
Sbjct: 237 VTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEA 296

Query: 301 AVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRM 360
           AVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRM
Sbjct: 297 AVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRM 356

Query: 361 RGTGVWADLLHQRFEKASRRLGIDHRNRAFATLDASRFKRPMVVPAGQRRSA-GDAQLDL 419
           RGTGVWADLL QRFEKASRRLGI HRNRAFATLDAS FKRP   P   R+ A  D Q+DL
Sbjct: 357 RGTGVWADLLQQRFEKASRRLGIHHRNRAFATLDASCFKRPQWAPQAPRQPARSDGQMDL 416

Query: 420 F 420
           F
Sbjct: 417 F 417


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,360,785
Number of extensions: 57924
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)