BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0108.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311225|ref|YP_003775317.1| hypothetical protein Hsero_1900...   363   e-102

>gi|300311225|ref|YP_003775317.1| hypothetical protein Hsero_1900
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  363 bits (931), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/214 (92%), Positives = 208/214 (97%)

Query: 1   MKDFSALQGLRRDLQEQEKARALALAERQRQEAAAREEANIFRNSIGQVAPLRPEVVDKA 60
           MKDF+AL+GLRRDLQEQEKARALALAER RQEAA REEAN+FRNSIGQ+APLR + +DKA
Sbjct: 7   MKDFAALKGLRRDLQEQEKARALALAERARQEAAIREEANLFRNSIGQIAPLRSKAIDKA 66

Query: 61  HYLPEPPLPIPRQHLADEQAALLESLSDEFTVDTLMDSDENLSFARPGVGMDVLSKLRRG 120
            +LP+ PLPIPRQHLADEQAALLESLSDEFT+DTLMDSDENLSFARPGVGMDVLSKLRRG
Sbjct: 67  LHLPDAPLPIPRQHLADEQAALLESLSDEFTIDTLMDSDENLSFARPGVGMDVLSKLRRG 126

Query: 121 NWVIQAQLDLHGYRRDQAREALGEFLRQSRRRGLRCVRVIHGKGLGSVNKEPVLKHKVRN 180
           NWVIQAQLDLHGYRRDQAREALGEFLRQSRRRGLRCVRVIHGKGLGSVNKEPVLKHKVRN
Sbjct: 127 NWVIQAQLDLHGYRRDQAREALGEFLRQSRRRGLRCVRVIHGKGLGSVNKEPVLKHKVRN 186

Query: 181 WLAQKDEVMAFCQARAADGGAGALVVLLRSSERA 214
           WLAQKDEVMAFCQARAADGGAGALVVLL+SSERA
Sbjct: 187 WLAQKDEVMAFCQARAADGGAGALVVLLKSSERA 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 535,383
Number of extensions: 20211
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)