BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0106.p
         (107 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoredu...   211   7e-57
gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase s...    64   3e-12

>gi|300311227|ref|YP_003775319.1| thioredoxin reductase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  211 bits (538), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/107 (96%), Positives = 105/107 (98%)

Query: 1   VVGDDSGVTGIKIKSTQDGAITEIPVHGLFIAIGHKPNTSIFDGQLEMQNGYLKTRTGTE 60
           VVGDDSGVTGIKIKSTQD AITEIPVHGLFIAIGHKPNTSIF+GQL MQNGYLKTRTGTE
Sbjct: 212 VVGDDSGVTGIKIKSTQDDAITEIPVHGLFIAIGHKPNTSIFEGQLSMQNGYLKTRTGTE 271

Query: 61  GFATATSIDGVFAAGDVQDHIYRQAITSAGTGCMAALDAQRYLEGLE 107
           GFATATSIDGVFAAGDVQDH+YRQAITSAGTGCMAALDAQRYLEGLE
Sbjct: 272 GFATATSIDGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRYLEGLE 318


>gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase
           subunit F [Herbaspirillum seropedicae SmR1]
          Length = 533

 Score = 63.5 bits (153), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 1   VVGDDSGVTGIKIKSTQDGAITEIPVHGLFIAIGHKPNTSIFDGQLEM-QNGYLKTRTGT 59
           + GD   V GI  K  + G I  +P+ G+F+ IG  PNT    G L + ++G ++     
Sbjct: 416 ITGDGQRVNGISYKERETGEIKHVPLEGVFVQIGLVPNTEWLKGTLALSKHGEIEIDAKG 475

Query: 60  EGFATATSIDGVFAAGDVQDHIYRQAITSAGTGCMAALDAQRYL 103
           +     TSI GVFAAGDV    Y+Q + + G G  AAL A  +L
Sbjct: 476 Q-----TSIPGVFAAGDVTTVPYKQIVIAVGAGATAALSAFDHL 514


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 334,001
Number of extensions: 12061
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 35
Effective length of database: 1,278,950
Effective search space: 44763250
Effective search space used: 44763250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)