BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0105.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoredu...   303   5e-84

>gi|300311227|ref|YP_003775319.1| thioredoxin reductase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  303 bits (777), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 153/193 (79%), Positives = 160/193 (82%), Gaps = 4/193 (2%)

Query: 2   STPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQ 61
           +TPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQ
Sbjct: 3   TTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQ 62

Query: 62  GPELMQRLLQHAERFNTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYLG 121
           GPELMQRLLQHAERF TEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYLG
Sbjct: 63  GPELMQRLLQHAERFKTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYLG 122

Query: 122 LPSEQAFMGRGVSACATCDGFFYRGRAYLKLFXGRGRRRQH---RRGRSTVPLQHRQQGH 178
           LPSEQAFMGRGVSACATCDGFFYRG+    +  G     +        S V + HR+   
Sbjct: 123 LPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTIIHRRD-K 181

Query: 179 HRAPPRQVPRRAH 191
            RA P  + R  H
Sbjct: 182 FRAEPILIDRLLH 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 606,878
Number of extensions: 22552
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)