BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0102.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311230|ref|YP_003775322.1| ferredoxin protein [Herbaspiril...   204   9e-55
gi|300310955|ref|YP_003775047.1| ferredoxin protein [Herbaspiril...   135   1e-33

>gi|300311230|ref|YP_003775322.1| ferredoxin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 112

 Score =  204 bits (520), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 96/111 (86%), Positives = 104/111 (93%)

Query: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLAIDPDGCIDCSMCVPECPVGAIYNATD 60
           MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFL IDPDGCIDCSMCVPECPVGAIYNATD
Sbjct: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATD 60

Query: 61  LPAALSHFEDLNARLAKLPGWKPITKAQPPLPDHAQWKDVADKLPLLKMPE 111
           LPA L+HFE LNARL++ PGWKPIT+A+PPLP H +WKDVADKLPLL+ P+
Sbjct: 61  LPATLAHFEQLNARLSRQPGWKPITQAKPPLPGHEKWKDVADKLPLLEQPQ 111


>gi|300310955|ref|YP_003775047.1| ferredoxin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 107

 Score =  135 bits (339), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 78/108 (72%), Gaps = 2/108 (1%)

Query: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLAIDPDGCIDCSMCVPECPVGAIYNATD 60
           M  VVTDSC++C+YTDCV VCP+DCF EGPNFLAIDPD CIDC++CV ECPV AIY   D
Sbjct: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  LPAALSHFEDLNARLAKLPGWKPITKAQPPLPDHAQWKDVADKLPLLK 108
           +PA    +  LNA L++   W  ITK + PLP+  +WKD  DKL  L+
Sbjct: 61  VPADQQQYIALNAELSR--SWPSITKTKAPLPEAEEWKDKTDKLQYLQ 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.141    0.487 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 374,335
Number of extensions: 13962
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)