BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0094.p (270 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311233|ref|YP_003775325.1| LysR family transcription regul... 468 e-133 gi|300313922|ref|YP_003778014.1| LysR family transcription regul... 124 7e-30 gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 121 5e-29 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 120 1e-28 gi|300313769|ref|YP_003777861.1| transcription regulator protein... 116 2e-27 >gi|300311233|ref|YP_003775325.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 315 Score = 468 bits (1205), Expect = e-133, Method: Compositional matrix adjust. Identities = 244/318 (76%), Positives = 249/318 (78%), Gaps = 51/318 (16%) Query: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTR 60 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSA SRAIARLEKALGTQLLQRTTR Sbjct: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTR 60 Query: 61 KLRLSASGEEIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVSVPLG------------- 107 KLRLS SG++IHARCRDMLNAAQAVLAVS AFDAEPQGQVRVSVP Sbjct: 61 KLRLSESGQDIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDF 120 Query: 108 -----------------------------------PPGLMGRRLMRIDHLLCATPHYLQE 132 PPGLMGRRLMRIDHLLCATPHYL Sbjct: 121 LAAHPKVDVLLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLAT 180 Query: 133 HGAPAHPQALKGHSCIYLGESPADARWRFRRQGKTVNVEVRGRYAANHTGVRLDATLRHV 192 HG PAHPQALK HSCIYLGESPADARWRFRRQGK+VNVEVRGRYAANHTGVRLDA LRH+ Sbjct: 181 HGTPAHPQALKEHSCIYLGESPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHL 240 Query: 193 GIASLPYFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLSAFVQFLAQR 252 GIASLPYFIARPALEEG LVQVLPQWSF+T YCGELWALYPATRHLPPRL AFVQFLAQR Sbjct: 241 GIASLPYFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQR 300 Query: 253 LAQEPXEPALAPGAKPVR 270 LAQ EP LA G K R Sbjct: 301 LAQ---EPTLAGGGKAAR 315 >gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 124 bits (312), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 139/307 (45%), Gaps = 62/307 (20%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTRKLRLSASGE 69 L M VF VV++GS S AA QL + SR +A LE +G +LL RTTR+L L+ +G Sbjct: 4 LMAMQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGN 63 Query: 70 EIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVS--------------VPLG-------- 107 E+ RCR ML ++ + A D P+G +R++ V G Sbjct: 64 ELLPRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPGVAV 123 Query: 108 --------------------------PPGLMGRRLMRIDHLLCATPHYLQEHGAPAHPQA 141 P L+ R L ++CATP YL HG P + Sbjct: 124 DLLALDRTVNLVEERIDLAIRMTNRLEPNLIARPLGVCRSIICATPDYLARHGLPRKVED 183 Query: 142 LKGHSCI---YLGES--PADARWRFRRQG------KTVNVEVRGRYAANHTGVRLDATLR 190 L H+C+ Y+G S D + + R G K +V V G +AN V L A L Sbjct: 184 LALHNCLTHSYVGRSLWQFDPKKKKARSGRGASAAKPQSVAVGGSISANEVTVLLQAVLA 243 Query: 191 HVGIASLPYFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLSAFVQFLA 250 VGI +P + P + G+LVQ+LP ++ G ++ +Y + +H+P L + FLA Sbjct: 244 GVGIGHMPAYTVAPLVASGQLVQLLP--DYEPLQLG-MYGVYASRKHMPATLRTMLDFLA 300 Query: 251 QRLAQEP 257 QR A +P Sbjct: 301 QRFAGQP 307 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 121 bits (304), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 142/292 (48%), Gaps = 57/292 (19%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTRKLRLSASGE 69 L M VFA+VVE GSF++AA+Q+G T + SRA+A LE+ L T+L+ RTTR++ L+ +GE Sbjct: 5 LQNMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTEAGE 64 Query: 70 EIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVS----------VP-------------- 105 RC+ +++ A ++A +P G++R+ +P Sbjct: 65 RYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDVAV 124 Query: 106 -------------------------LGPPGLMGRRLMRIDHLLCATPHYLQEHGAPAHPQ 140 L GL+ R+L +LCA+P YL ++GAP P Sbjct: 125 ELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQQPA 184 Query: 141 ALKGHSCIYLGE--SPADARWRFRR-QGKTVNVEVRGRYAANHTGVRLDATLRHVGIASL 197 L H+C+ L SP D W +G TV V V+ + N L A +GI L Sbjct: 185 DLLNHACLQLVSPISPLD-EWILEGPEGGTV-VAVKSNFQVNVAEAMLTAIREGMGIGVL 242 Query: 198 PYFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLSAFVQFL 249 P + A AL G +V+VLPQ + ++ALYP+ ++L ++S +V ++ Sbjct: 243 PIYSAVDALRAGTIVRVLPQHRLQNM---GVYALYPSRQYLDAKISTWVDWM 291 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 128/294 (43%), Gaps = 51/294 (17%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTRKLRLSASGE 69 L E+ F V + GSF +AA LG + +A SR + LE LG++L+QRTTR+L L+ +G Sbjct: 4 LREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGA 63 Query: 70 EIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVSVPL----------------------- 106 RC+ ++ A + + ++ A+P G +R++ PL Sbjct: 64 LYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISL 123 Query: 107 -------------------------GPPGLMGRRLMRIDHLLCATPHYLQEHGAPAHPQA 141 L+ R+L +CA+P YL HG PAHP Sbjct: 124 DITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHE 183 Query: 142 LKGHSCIYLGESPADARWRFRRQGKTVNVEVRGRYAANHTGVRLDATLRHVGIASLPYFI 201 L H I + + W+F V+V V R N+ + A L +GI P F+ Sbjct: 184 LAQHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTFM 243 Query: 202 ARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLSAFVQFLAQRLAQ 255 L G+LV +L + ++A+YP+ HLP ++ A + FL + AQ Sbjct: 244 IDQYLRSGQLVSILGDYGAPEL---GIYAVYPSRAHLPAKMRAMLDFLTEAFAQ 294 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/297 (31%), Positives = 140/297 (47%), Gaps = 54/297 (18%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTRKLRLSASGE 69 LN++A+FA VV GSFS AAR L S SR +A LE+ LG +LLQR+TR +R++ G Sbjct: 4 LNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTEVGS 63 Query: 70 EIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVSVPLGPP-------------------- 109 C M NAA+A + V+ A P G++RVS P+G Sbjct: 64 AFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHPDVRL 123 Query: 110 --GLMGRRL----------MRI-----------------DHLLCATPHYLQEHGAPAHPQ 140 L RR+ MR+ +L A+P Y++ HG Q Sbjct: 124 ELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHGPFDTVQ 183 Query: 141 ALKGHSCIYLGESPADA-RWRFRR-QGKTVNVEVRGRYAANHTGVRLDATLRHVGIASLP 198 +L+G + G P A RWR + G+ ++ + + + + VG+A LP Sbjct: 184 SLQGQRGLGPGGLPGQAQRWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVGLALLP 243 Query: 199 YFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLSAFVQFLAQRLAQ 255 + +A A+ G LV VLPQ+ +L A++P+ R L P + AF++FLA L+Q Sbjct: 244 FNVAHGAIARGELVVVLPQYRGAPH---QLHAVFPSRRGLVPAVRAFIEFLAVELSQ 297 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 815,151 Number of extensions: 33415 Number of successful extensions: 228 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 48 Length of query: 270 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 186 Effective length of database: 1,222,130 Effective search space: 227316180 Effective search space used: 227316180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)