BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0085.p
         (404 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311240|ref|YP_003775332.1| CBS-domain-containing membrane ...   692   0.0  

>gi|300311240|ref|YP_003775332.1| CBS-domain-containing membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/404 (87%), Positives = 371/404 (91%), Gaps = 6/404 (1%)

Query: 1   MPDSILLWLKSFIPAKTNVDRFERMRACAGSLFGILLVGLTSYALLPHEARTIWLIAPMG 60
           MPDSI LW KSFIPAK NVDRFERMR+CAGSLFGILLVG+ SYA+LPH+A TIWLIAPMG
Sbjct: 3   MPDSISLWFKSFIPAKANVDRFERMRSCAGSLFGILLVGMVSYAVLPHKAGTIWLIAPMG 62

Query: 61  ASAVLLFAVPSSPLAQPWSILGGNLCAALIGVSCAKLVQEPALAAALAIALAIGGMFLLR 120
           ASAVLLFAVPSSPLAQPWSI+GGNLCAALIGV+CAKLV EPALAAALAIALAIG MF LR
Sbjct: 63  ASAVLLFAVPSSPLAQPWSIIGGNLCAALIGVTCAKLVPEPALAAALAIALAIGAMFYLR 122

Query: 121 CIHPPSGAVALTAVLGGPVVHDMGYAFVLSPVLLNSALLLAAALFYNNATGRRYPHAQHS 180
           CIHPPSGAVALTAVLGGP V  MGY FVLSPVLLNS LLLA ALF+NNA+GRRYPHAQ S
Sbjct: 123 CIHPPSGAVALTAVLGGPAVQAMGYGFVLSPVLLNSVLLLATALFFNNASGRRYPHAQQS 182

Query: 181 AAPHPHQTRDELPITRLGFSHEDLDAVLKDFNQVLDIGRDDLEEIFLQTEMRAYHRRFGQ 240
           AAPHPH TRDELPITRLGFSHEDLD VLK +NQVLDIGRDDLEEIFLQTEMRAYHRRFGQ
Sbjct: 183 AAPHPHHTRDELPITRLGFSHEDLDEVLKRYNQVLDIGRDDLEEIFLQTEMRAYHRRFGQ 242

Query: 241 TLCAAVMSRDVVAVEFATGLDEAWRLLQEHQLRALPVLDRGRHVIGIVSRTDFLEHAGVE 300
           TLCA+VMSRDVVAVEFATGLDEAWRLLQ H+LRALPV+DRGRHVIGI+SR+DFLEHAGVE
Sbjct: 243 TLCASVMSRDVVAVEFATGLDEAWRLLQAHRLRALPVIDRGRHVIGIISRSDFLEHAGVE 302

Query: 301 VHTGLAAQLRRLLHRVPFTHSDKPEVVGQIMSRPVITAQVDTPVLELVPRMADGLHQIPV 360
           VHTGL AQLR LLHRVP  HSDKPEVVGQIMSRPV+TAQVDTP+LELVPRMADGLHQIPV
Sbjct: 303 VHTGLTAQLRALLHRVPLLHSDKPEVVGQIMSRPVVTAQVDTPLLELVPRMADGLHQIPV 362

Query: 361 VQADGKLVGMLTQSDMIAALYEKNLVAARAVAATGAVSSLRSAA 404
           VQADGKL GMLTQSDMIAALYEKNL AAR      +  SLRSAA
Sbjct: 363 VQADGKLAGMLTQSDMIAALYEKNLAAAR------SGPSLRSAA 400


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,163,983
Number of extensions: 47896
Number of successful extensions: 254
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,207,925
Effective search space: 382912225
Effective search space used: 382912225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)