BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0082.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum form...   311   2e-86
gi|300312858|ref|YP_003776950.1| inhibition of septum formation ...    77   8e-16

>gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum
           formation inhibitor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 226

 Score =  311 bits (798), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/220 (79%), Positives = 187/220 (85%), Gaps = 1/220 (0%)

Query: 8   IRVLLFQHGAWRAFTMTQHRTDSTLPRLILGSSSVYRKELLGRLGLPFETMAPDIDETPQ 67
           +R +  Q   +   TM+     +   RLILGSSSVYRK+LL RLGLPFETM PDIDETPQ
Sbjct: 1   MRTITPQTHPFPLLTMSHSHFTAPTTRLILGSSSVYRKQLLERLGLPFETMTPDIDETPQ 60

Query: 68  PGENPEATALRLAREKAAAIAVRVGPALVIGSDQVATLDGLQIGKPGNHANALKQLQLMR 127
            GE PEATALRLAR KAAAIA R G ALVIGSDQVATLDG QIGKPGNHANAL+QLQ+MR
Sbjct: 61  AGETPEATALRLARAKAAAIAARAGAALVIGSDQVATLDGQQIGKPGNHANALRQLQMMR 120

Query: 128 GREVIFHTALCLWDGRQADAA-AAQVCNVQTVVRFRDLEDAELDAYLRIEQPYDCAGSAK 186
           GREVIFHTALCLWDGR+ DAA AAQ+CNVQT+VR RDL DAELDAYL IEQPYDCAGSAK
Sbjct: 121 GREVIFHTALCLWDGRRTDAAQAAQLCNVQTLVRMRDLSDAELDAYLHIEQPYDCAGSAK 180

Query: 187 NEGLGIAILESIRSDDPTALTGLPLIALTGMLRRAGVPFF 226
           NEGLGIAILESIRSDDPTALTGLPLIALT MLR+AGV FF
Sbjct: 181 NEGLGIAILESIRSDDPTALTGLPLIALTTMLRQAGVGFF 220


>gi|300312858|ref|YP_003776950.1| inhibition of septum formation
           nucleotide-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 204

 Score = 77.4 bits (189), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 34  RLILGSSSVYRKELLGRLGLPFETMAPD--IDETPQPGENPEATALRLAREK----AAAI 87
           ++ L S S  R+ELL ++G+ FE +  D  +DE+  PGE P     R+ R K       +
Sbjct: 7   KIYLASKSPRRRELLRQIGIDFELLLSDKEVDESVLPGEAPMDYVARVTRAKLDSAQQTM 66

Query: 88  AVRVGPAL-VIGSDQVATLDGLQIGKPGNHANALKQLQLMRGREVIFHTALCLWDGRQAD 146
            +R  P   ++ +D    +D L +GKP +H  A++ + L+ GR     T++ +      +
Sbjct: 67  ILRQLPHRPLLSADTTVVVDDLILGKPADHDEAVRMISLLSGRTHQVLTSVAVGVTMGVE 126

Query: 147 AAAAQVCNVQTVVRFRDLEDAELDAYLRIEQPYDCAGSAKNEGLGIAILESIRSDDPTAL 206
               Q+   Q+ V F  L +  + AY    +PYD AG+   +GL    + +I     + +
Sbjct: 127 TQVWQIVQ-QSDVSFAPLTEQAIAAYCHTVEPYDKAGAYGIQGLASVFISNIVGSH-SGI 184

Query: 207 TGLPLIALTGMLRRAGV 223
            GLPL     +L++AGV
Sbjct: 185 MGLPLFETAQLLQQAGV 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 750,953
Number of extensions: 31505
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)