BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0081.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311244|ref|YP_003775336.1| metal-binding, possibly nucleic...   305   2e-84

>gi|300311244|ref|YP_003775336.1| metal-binding, possibly nucleic
           acid-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  305 bits (780), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 157/166 (94%), Gaps = 1/166 (0%)

Query: 12  MNAFVIDAFEFCRLKQQAQGEIPVAELGRLAQETVDRSGAIHWTLSGDIDKLGHAQLSLA 71
           MNAFVIDAF+FCRLKQQAQGEIPVAELGRLAQETVDRSG I W LSGDIDKLGHAQLSLA
Sbjct: 1   MNAFVIDAFDFCRLKQQAQGEIPVAELGRLAQETVDRSGTIRWALSGDIDKLGHAQLSLA 60

Query: 72  VSGAVNLICQRCLTALNFEIDSKSLLVLAKDEAQADTIEELLDDDEIDVIVGSAAFDVNY 131
           VSGAVNLICQRCLTALNFEIDSKSLLVLAKDEAQAD IEELLDDDEIDVIVGSAAFDVNY
Sbjct: 61  VSGAVNLICQRCLTALNFEIDSKSLLVLAKDEAQADAIEELLDDDEIDVIVGSAAFDVNY 120

Query: 132 LIEDDALLALPVAPKHDVCPD-GSVAAEAKGAERASPFEVLKKLKQ 176
           LIED+ALLALPVAPKHD CP+ GS A EAK AERASPFEVLKKLKQ
Sbjct: 121 LIEDEALLALPVAPKHDKCPEGGSAAVEAKSAERASPFEVLKKLKQ 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 473,888
Number of extensions: 16270
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)