BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0079.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311246|ref|YP_003775338.1| fatty acid/phospholipid synthes...   717   0.0  

>gi|300311246|ref|YP_003775338.1| fatty acid/phospholipid synthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/365 (96%), Positives = 357/365 (97%)

Query: 1   MTIKISIDCMGGDHGPSVTLPAAASFLKRQPDAELILVGQEAVLQPLLKKYKLAGEARIR 60
           MTIKISIDCMGGDHGPSVTLPAAASFLKRQ DAELILVGQEAVLQPLLKKYKLAGEARIR
Sbjct: 1   MTIKISIDCMGGDHGPSVTLPAAASFLKRQSDAELILVGQEAVLQPLLKKYKLAGEARIR 60

Query: 61  IHNASEVVTMDDPIEVALRRKKDSSLRVAVTLVKEGQAHAAVSAGNTGALMAVSRYVLKT 120
           IHNA+EVVTM+DP+EVALRRKKDSSLRVAVTLVK+GQA AAVSAGNTGALMAVSRYVLKT
Sbjct: 61  IHNATEVVTMEDPVEVALRRKKDSSLRVAVTLVKDGQAQAAVSAGNTGALMAVSRYVLKT 120

Query: 121 LPGVDRPAICTILPNQKDGPTYMLDLGANVDCEPQHLHQFALMGSALVAVMEGKAKPTVG 180
           LPGVDRPAICTILPNQKDGPTYMLDLGANVDCEPQHLHQFALMGSALVAVMEGKAKPTVG
Sbjct: 121 LPGVDRPAICTILPNQKDGPTYMLDLGANVDCEPQHLHQFALMGSALVAVMEGKAKPTVG 180

Query: 181 LLNVGEEDMKGNELVKATAALLRGDHEKGILNFYGNVEGNDIFEGTTDLVVCDGFVGNVT 240
           LLNVGEEDMKGNELVKATA LLR DHEKGILNFYGNVEGNDIFEGTTDLVVCDGFVGNVT
Sbjct: 181 LLNVGEEDMKGNELVKATAGLLRADHEKGILNFYGNVEGNDIFEGTTDLVVCDGFVGNVT 240

Query: 241 LKASEGLGRFVKQVLTSEFKKGIINKLGALIAYGAIKALSRRLNPSRYNGASLLGLKGLV 300
           LKASEGLGRFVKQVLTSEFKKG++NKLGALIAYGAIKALSRRLNPSRYNGASLLGLKGLV
Sbjct: 241 LKASEGLGRFVKQVLTSEFKKGLVNKLGALIAYGAIKALSRRLNPSRYNGASLLGLKGLV 300

Query: 301 FKSHGGADVYAFEWAIRRAYDAAKYDVLARIAASMAELMPQEQGRTAEAVAKAFEPAPVS 360
           FKSHGGADVYAFEWAIRRAYDAAKYDVLARIAASMAELMPQ QGRTAEA A A EPAPVS
Sbjct: 301 FKSHGGADVYAFEWAIRRAYDAAKYDVLARIAASMAELMPQGQGRTAEAAALASEPAPVS 360

Query: 361 LDQPN 365
           LDQPN
Sbjct: 361 LDQPN 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,139,019
Number of extensions: 47438
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)