BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0078.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311247|ref|YP_003775339.1| 3-oxoacyl-[acyl-carrier-protein...   606   e-175
gi|300313493|ref|YP_003777585.1| 3-oxoacyl-(acyl-carrier-protein...   117   1e-27

>gi|300311247|ref|YP_003775339.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase III [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  606 bits (1563), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 309/328 (94%), Positives = 317/328 (96%), Gaps = 5/328 (1%)

Query: 1   MTTYSKIVGTGSYLPAKRVTNHELAAQLAEQGIETSDEWIVTRSGISARHYAEPGQLSSD 60
           MTTYSKI+GTGSYLPAKRVTN ELAAQLAEQGIETSDEWIVTRSGISARHYAEP +LSSD
Sbjct: 1   MTTYSKIIGTGSYLPAKRVTNQELAAQLAEQGIETSDEWIVTRSGISARHYAEPAELSSD 60

Query: 61  LALQAAQRALEAAGMQANDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQA 120
           LALQAAQRAL+AAG+Q NDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQA
Sbjct: 61  LALQAAQRALQAAGLQPNDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQA 120

Query: 121 VCSGFVYAMSVADSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAVIMSASQ 180
           VCSGFVYAMSVADSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAV+MSASQ
Sbjct: 121 VCSGFVYAMSVADSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAVVMSASQ 180

Query: 181 EPGVLATKLHADGSHGHILCVPGSIDNGAVAGSAYLYMDGPAVFKLAVSLLDKVAREALE 240
           EPGVLATKLHADGSHGHILCVPGS++NGAVAGSAYLYMDGPAVFKLAVSLLDKVAREALE
Sbjct: 181 EPGVLATKLHADGSHGHILCVPGSVNNGAVAGSAYLYMDGPAVFKLAVSLLDKVAREALE 240

Query: 241 AAKMQST-----XPHQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVR 295
           AA MQST      PHQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVR
Sbjct: 241 AANMQSTDVDWLVPHQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVR 300

Query: 296 DGRIRPGHTVMMEGVGGGFTWGAVLARM 323
           DGRI+PGHTVMMEGVGGGFTWGAVL RM
Sbjct: 301 DGRIQPGHTVMMEGVGGGFTWGAVLVRM 328


>gi|300313493|ref|YP_003777585.1| 3-oxoacyl-(acyl-carrier-protein)
           synthase III [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 158/323 (48%), Gaps = 41/323 (12%)

Query: 13  YLPAKRVTNHELAAQLAEQGIETSDEWIVTRSGISARHYAEPGQLSSDLALQAAQRALEA 72
           YLP+ R +N +LA++      + +++++  + G+  R    PGQ +SD+A +A ++ L  
Sbjct: 11  YLPSGRESNLDLASRF-----DVTEDFLANKIGVLHRTTRSPGQETSDMAFEALEQLLRQ 65

Query: 73  AGMQANDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQAVCSGFVYAMSVA 132
             +  ++I ++I+ T  PD     P  + ++  +  +       D+   CSG+VY +SV 
Sbjct: 66  GKVVRDEIQVMIVVTQNPD--SRLPHVSGLLHARAALPKQCATFDLSLGCSGYVYGLSVL 123

Query: 133 DSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAVIMSASQEPGVLATKLHAD 192
            SF+++   +  ++I  + +S+I+D +D+ T +LFGD A A ++ A  +P          
Sbjct: 124 TSFMQANGLEKGVLITCDPYSKIVDPEDKNTVLLFGDAATATLVGA--DP---------- 171

Query: 193 GSHGHILCVPGSID---NGAVAGSAY-----LYMDGPAVFKLAVSLLDKVAREALEAAKM 244
                 + VP S D    G   GS +     L+M+G  VF  A +++       LE A +
Sbjct: 172 ------VLVPASFDFGSQGDATGSLHERDGRLHMNGRDVFNFAATVVPGSVTATLEKAGL 225

Query: 245 QSTXP-----HQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVRDGRI 299
                     HQ +  I++   K++ L   K+ + + + GNT ++SIPL L + + +   
Sbjct: 226 DREDIDVYLFHQGSRYIVETLTKRLKLDSAKVRIDINDTGNTVSSSIPLLLAKELHN--- 282

Query: 300 RPGHTVMMEGVGGGFTWGAVLAR 322
                +++ G G G +W + + +
Sbjct: 283 TIAQRILLCGFGVGLSWASCICQ 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 961,761
Number of extensions: 36744
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)