BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0074.p (413 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 847 0.0 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 218 1e-57 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 118 1e-27 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/413 (99%), Positives = 413/413 (100%) Query: 1 LSRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGF 60 +SRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGF Sbjct: 1 MSRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGF 60 Query: 61 NIEDYIPAKEARHMDTFIHFGMAAGIQAIQDSGLTVTDENAERIGVMIGSGIGGLPLIEE 120 NIEDYIPAKEARHMDTFIHFGMAAGIQA+QDSGLTVTDENAERIGVMIGSGIGGLPLIEE Sbjct: 61 NIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAERIGVMIGSGIGGLPLIEE 120 Query: 121 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM 180 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM Sbjct: 121 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM 180 Query: 181 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG 240 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG Sbjct: 181 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG 240 Query: 241 VMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNPDEVQ 300 VMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNPDEVQ Sbjct: 241 VMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNPDEVQ 300 Query: 301 YLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVH 360 YLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVH Sbjct: 301 YLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVH 360 Query: 361 NQVSPPTMNIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGKM 413 NQVSPPTMNIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGKM Sbjct: 361 NQVSPPTMNIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGKM 413 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 218 bits (554), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/417 (33%), Positives = 211/417 (50%), Gaps = 10/417 (2%) Query: 1 LSRTR-ERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDA-TPFTTHFAGEVK 58 ++R R ERRVV+TG+ ISP+G + + +K G + + + +D T Sbjct: 1 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA 60 Query: 59 GFNIEDYIPAKEARHMDTFIHFGMAAGIQAIQDSGLTVTDE--NAERIGVMIGSGIGGLP 116 F++ + K R M A A+ D+GL + D + ++G+ GS G Sbjct: 61 EFSLSERYNRKTTRSMGRVALMATRASEWALADAGL-LDDPLLKSGQLGIAYGSSAGTPN 119 Query: 117 LIEETHAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGS 176 I + + R I+ + + N+ + FG+ G + +ACT+G IG Sbjct: 120 AIADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGY 179 Query: 177 AARMIMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLG 236 A I G MVAGGAE + F + A S RND P P+D+DRDG VLG Sbjct: 180 AYETIRSGRQLAMVAGGAEE-LCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLG 238 Query: 237 EGAGVMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNP 296 EGAG ++LE+ EHA+ARGA I+AE++GFG + D H+T PN + + AL DAG+ Sbjct: 239 EGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPA 298 Query: 297 DEVQYLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTV 356 + Y+NAHGT T GD E+ A FG ++S KS GH LG G LE L++ Sbjct: 299 SAIGYINAHGTGTRQGDVAETQATARVFGK---ATPISSLKSYMGHTLGACGALEAWLSI 355 Query: 357 LAVHNQVSPPTMNIFNQDPEC-DLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 + + PT+N+ + DP+C +LDY R ++ + + N+F FGG N +L+ + Sbjct: 356 EMMRHGWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKR 412 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 110/416 (26%), Positives = 184/416 (44%), Gaps = 35/416 (8%) Query: 9 VVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKF-DA--TPFTTHFAGEVKGFNIEDY 65 + + LG + P+G+ + + G SG+ ++ DA P + +D+ Sbjct: 3 LYLNALGMVCPLGSAHDAIRTRLLAGVSGLRADARYLDAHGEPLALGAVPDDTRLPEDDH 62 Query: 66 IPAKEARHMDTFIHFGMAAGIQAIQDSGLTVTDENAERIGVMIGSGIGGLPLIEETHAEL 125 +P +E R + + I+ D+ + AERIG+++G+ G+ E A Sbjct: 63 LPLRE-RSRNNRLALAALQRIRVQVDA--AIARYGAERIGIVLGTSTSGIAEGEAAFAAR 119 Query: 126 TNRGPRRISP-FFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARMIMYG 184 P + + + L + G GP +AC + I SAAR++ G Sbjct: 120 AAS--GSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMG 177 Query: 185 DADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAGVMVL 244 D ++ GG ++ + I GF + ++S + +P + R G +GEGA + +L Sbjct: 178 LCDAVLCGGVDT-LCQFTIAGFTALESVSAQRCNPLSL------HRQGINIGEGAALFLL 230 Query: 245 EEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDG--PRRCVLNALRDAGVNPDEVQYL 302 A +L G+G S DAYH++AP+ +G + + ALR AG+ ++ Y+ Sbjct: 231 TREPAA--------VQLSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYI 282 Query: 303 NAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVHNQ 362 N HGT+TP D ES ++A FG ++ V+STK TGH LG A +E L L + + Sbjct: 283 NLHGTATPQNDAMESKVVQALFG---LEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDD 339 Query: 363 ----VSPPTMNIFNQDPECD--LDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 + PP + DP Q + + NSF FGG+N LV + Sbjct: 340 NPDGLLPPHLWDGVADPALPALAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSR 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,376,245 Number of extensions: 61256 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 3 Length of query: 413 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 325 Effective length of database: 1,203,190 Effective search space: 391036750 Effective search space used: 391036750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)