BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0065.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I) fa...   449   e-128
gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I) fa...   117   5e-28

>gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  449 bits (1156), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%)

Query: 1   VIALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLPIINKKIIEVNQPQRG 60
           VIALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLPIINKKIIEVNQPQRG
Sbjct: 90  VIALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLPIINKKIIEVNQPQRG 149

Query: 61  DVMVFKYPKDMSVDYIKRVVGVPGDKIVYKNKRLTVNGEQISYKALPDYLDDENLTYYKQ 120
           DVMVFKYPKDMSVDYIKRVVGVPGDKIVYKNKRLTVNGEQISYKALPDYLD+ENLTYYKQ
Sbjct: 150 DVMVFKYPKDMSVDYIKRVVGVPGDKIVYKNKRLTVNGEQISYKALPDYLDEENLTYYKQ 209

Query: 121 WQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNAEGFACTVPPGEYFMMGDNRDNS 180
           WQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNAEGFACTVPPGEYFMMGDNRDNS
Sbjct: 210 WQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNAEGFACTVPPGEYFMMGDNRDNS 269

Query: 181 LDSRYWGFVPDQNIVGKAFFVWMNLGDIKRIGSFH 215
           LDSRYWGFVPDQNIVGKAFFVWMNLGDIKRIGSFH
Sbjct: 270 LDSRYWGFVPDQNIVGKAFFVWMNLGDIKRIGSFH 304


>gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  117 bits (294), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 21/207 (10%)

Query: 2   IALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLPIINKKIIEVNQPQRGD 61
           IAL+   RS + +   +PS SM+PT+ +GD ILV+K  Y +RLP+ +  ++ + +PQRGD
Sbjct: 19  IALMVMFRSAIADYNVVPSGSMLPTVQIGDRILVDKMAYDLRLPLTHISLLRLGEPQRGD 78

Query: 62  VMVFKYPKDMSVDYIKRVVGVPGDKIVYKNKRLTVNGEQISY---KALPDYLDDENLTYY 118
           ++     +   +  +KR+VG+PGD +  ++  L +NG+   Y      P+  D  +   Y
Sbjct: 79  IVTIDSRQAGEL-LVKRIVGLPGDVVELRDNVLFINGQPAHYHPAAEAPEAGDGSDQAAY 137

Query: 119 KQWQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNAEGFACTVPPGEYFMMGDNRD 178
           +   E    +EH +      P+               +++ G    VPPG Y M+GDNRD
Sbjct: 138 R--DERYGAMEHAVRLSAAHPSL--------------HSSYG-PVVVPPGHYMMLGDNRD 180

Query: 179 NSLDSRYWGFVPDQNIVGKAFFVWMNL 205
           NS+DSRY+GF     ++G+   +  +L
Sbjct: 181 NSMDSRYFGFFARDELMGRTRRIAFSL 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.142    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 696,403
Number of extensions: 28251
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)