BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0059.p
         (468 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311265|ref|YP_003775357.1| beta-N-acetylhexosaminidase [He...   674   0.0  
gi|300311264|ref|YP_003775356.1| phosphopantetheinyl transferase...   129   4e-31

>gi|300311265|ref|YP_003775357.1| beta-N-acetylhexosaminidase
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/342 (97%), Positives = 339/342 (99%)

Query: 127 MNQAVKPLGPVMLDVVGTTLDAADIARLQHPLTGGVILFARNYENRAQLVALTAAIRQAR 186
           MNQAVKPLGPVMLDVVGT L+AADIARLQHPLTGGVILFARNYE+RAQLVALT+AIRQAR
Sbjct: 1   MNQAVKPLGPVMLDVVGTRLEAADIARLQHPLTGGVILFARNYESRAQLVALTSAIRQAR 60

Query: 187 PGILIAVDHEGGRVQRFRTDGFTRLPAMGQLGQLWDRDVLQATKVATATGFVLAAELRAC 246
           PGILIAVDHEGGRVQRFRTDGFTRLPAMGQLGQLWDRDVLQATKVATATGFVLAAELRAC
Sbjct: 61  PGILIAVDHEGGRVQRFRTDGFTRLPAMGQLGQLWDRDVLQATKVATATGFVLAAELRAC 120

Query: 247 GIDLSFTPVLDLDYGVSSVIGDRSFHRDPRVVTLMAKSLNHGLALAGMANCGKHFPGHGF 306
           GIDLSFTPVLDLDYG S+VIGDRSFHRDPRVVTLMAKSLNHGLALAGMANCGKHFPGHGF
Sbjct: 121 GIDLSFTPVLDLDYGASTVIGDRSFHRDPRVVTLMAKSLNHGLALAGMANCGKHFPGHGF 180

Query: 307 VTADSHVAIPVDERGLDEILGDDATPYDWLGMSLAAVMPAHVIYPKVDAQPAGFSKVWLS 366
           VTADSHVAIPVDER LDEILGDDATPYDWLGMSLAAVMPAHVIYPKVDAQPAGFSKVWLS
Sbjct: 181 VTADSHVAIPVDERELDEILGDDATPYDWLGMSLAAVMPAHVIYPKVDAQPAGFSKVWLS 240

Query: 367 MLRERFGFQGVIFSDDLSMHGASVAGGPLQAAQAALDAGCDVALICNSPDKADAILAGLQ 426
           MLRERFGFQGVIFSDDLSMHGASVAGGPL+AAQAALDAGCDVALICNSPDKADAILAGLQ
Sbjct: 241 MLRERFGFQGVIFSDDLSMHGASVAGGPLEAAQAALDAGCDVALICNSPDKADAILAGLQ 300

Query: 427 GGTDAASAARRATLLPCGEALAWDALQADPRYLAARALLQSL 468
           GGTDAASAARRATLLPCGEALAWDALQADPRYLAARAL+QSL
Sbjct: 301 GGTDAASAARRATLLPCGEALAWDALQADPRYLAARALVQSL 342


>gi|300311264|ref|YP_003775356.1| phosphopantetheinyl transferase
          [Herbaspirillum seropedicae SmR1]
          Length = 130

 Score =  129 bits (325), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 67/71 (94%)

Query: 1  MIYGIGTDILQISRLEATLGRHGDGFAAKILGPQEMEKYLRRKAKVEARGVRFLATRFAA 60
          MIYGIGTDILQISRL+A L R+GD FA KILGPQEMEKYLRRKAKVEARGVRFLATRFAA
Sbjct: 1  MIYGIGTDILQISRLQAALQRNGDRFAGKILGPQEMEKYLRRKAKVEARGVRFLATRFAA 60

Query: 61 KEAFSKAIGMG 71
          KEAFSKAIG+G
Sbjct: 61 KEAFSKAIGLG 71


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,344,559
Number of extensions: 53155
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 2
Length of query: 468
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 379
Effective length of database: 1,198,455
Effective search space: 454214445
Effective search space used: 454214445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)