BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0058.p
         (606 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311266|ref|YP_003775358.1| excinuclease ABC subunit C [Her...  1226   0.0  

>gi|300311266|ref|YP_003775358.1| excinuclease ABC subunit C
           [Herbaspirillum seropedicae SmR1]
          Length = 621

 Score = 1226 bits (3173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/606 (98%), Positives = 603/606 (99%)

Query: 1   VLETVARLPHLPGVYRYFDAEDNVLYVGKARDLKKRVSSYFQKTLTSPRIAMMVERIARL 60
           VLETVARLPHLPGVYRYFDAEDNVLYVGKARDLKKRVSSYFQKTLTSPRIAMMVERIARL
Sbjct: 16  VLETVARLPHLPGVYRYFDAEDNVLYVGKARDLKKRVSSYFQKTLTSPRIAMMVERIARL 75

Query: 61  ETTVTRSEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKITGHAFPRMAYYRGAVDKRS 120
           ETTVTRSEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKITGHAFPRMAYYRGAVDKR+
Sbjct: 76  ETTVTRSEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKITGHAFPRMAYYRGAVDKRN 135

Query: 121 QYFGPFPNAGAVKESIQILQKVFLLRTCEDTVFTNRTRPCLLHQIHRCSGPCVNLVSRED 180
           QYFGPFPNAGAVKESIQILQKVFLLRTCEDTVF+NRTRPCLLHQIHRCSGPCVNLVSRED
Sbjct: 136 QYFGPFPNAGAVKESIQILQKVFLLRTCEDTVFSNRTRPCLLHQIHRCSGPCVNLVSRED 195

Query: 181 YALDVENASKFLRGRQSEVMEALEQKMHAFAADLKFEQAAAVRDQIGSLSSVLHQQSMET 240
           YA+DVENASKFLRGRQSEVMEALEQKMHAFAADLKFEQAAAVRDQIGSLSSVLHQQSMET
Sbjct: 196 YAIDVENASKFLRGRQSEVMEALEQKMHAFAADLKFEQAAAVRDQIGSLSSVLHQQSMET 255

Query: 241 VSDADIDIIAVTVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAMDTAEESIEVEVLKAF 300
           VSDADIDIIAV VQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAMDTAE+SI+VEVLKAF
Sbjct: 256 VSDADIDIIAVVVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAMDTAEDSIDVEVLKAF 315

Query: 301 LAQHYIDKFIPGSLIVGTEFDDPALMMALMEQCGHRITLTFQPQGQRRQWLEMAAKGAEI 360
           LAQHYIDKFIPGSLIVGTEFDDPALMMALMEQCGHRITLTFQPQGQRRQWLEMAAKGAEI
Sbjct: 316 LAQHYIDKFIPGSLIVGTEFDDPALMMALMEQCGHRITLTFQPQGQRRQWLEMAAKGAEI 375

Query: 361 ALARLLSEQGSQQARTRALAEVLELEREDLDELRAECFDISHTQGEATQASCVVFHHHAM 420
           ALARLLSEQGSQQARTRALA+VLELER+DLDELRAECFDISHTQGEATQASCVVFHHHAM
Sbjct: 376 ALARLLSEQGSQQARTRALADVLELERDDLDELRAECFDISHTQGEATQASCVVFHHHAM 435

Query: 421 QNGEYRRYNINDITPGDDYAAMRQVLTRRYEKVANGEGVMPDIVLIDGGKGQVEMARQVL 480
           QNGEYRRYNINDITPGDDYAAMRQVLTRRYEKVANGEGVMPDIVLIDGGKGQVE ARQVL
Sbjct: 436 QNGEYRRYNINDITPGDDYAAMRQVLTRRYEKVANGEGVMPDIVLIDGGKGQVETARQVL 495

Query: 481 TELGLDISLIVGVAKGEGRKVGLETLVFADGRAPKELGKESAALMLIAQIRDEAHRFAIT 540
           TELGLDISLIVGVAKGEGRKVGLETLVFADGRAPKELGKESAALMLIAQIRDEAHRFAIT
Sbjct: 496 TELGLDISLIVGVAKGEGRKVGLETLVFADGRAPKELGKESAALMLIAQIRDEAHRFAIT 555

Query: 541 GMRAKRAKARQTSRLEEIEGIGAKRRQRLLVRFGGLRGVVDASVDDLASVEGISRQLAEE 600
           GMRAKRAKARQ+SRLEEIEGIGAKRRQRLLVRFGGLRGV DASVDDLASVEGISRQLAEE
Sbjct: 556 GMRAKRAKARQSSRLEEIEGIGAKRRQRLLVRFGGLRGVADASVDDLASVEGISRQLAEE 615

Query: 601 IYRQLH 606
           IYRQLH
Sbjct: 616 IYRQLH 621


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,634,359
Number of extensions: 63386
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 2
Length of query: 606
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 515
Effective length of database: 1,188,985
Effective search space: 612327275
Effective search space used: 612327275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)