BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0055.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311278|ref|YP_003775370.1| nicotinate-nucleotide-dimethylb...   444   e-126

>gi|300311278|ref|YP_003775370.1|
           nicotinate-nucleotide-dimethylbenzimidazole-P
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 344

 Score =  444 bits (1143), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/298 (80%), Positives = 267/298 (89%)

Query: 11  QGSDHPLLRQSAIVVCAGDHGVTAEGVSAYPQSVTWQMVENFLAGGAAINIFARQNECAL 70
           Q ++ P++ + AI+VCAGDHGVT EGVSAYPQSVTWQMVENFLAGGAAIN+FARQN  AL
Sbjct: 46  QATERPVIARPAIIVCAGDHGVTDEGVSAYPQSVTWQMVENFLAGGAAINVFARQNGIAL 105

Query: 71  YIVDTGVNHDFGPRDGLLDRKIAPGTANFCQGPAMTAQQCQAALLAGLQFAESLQADVLG 130
           +IVD GVNHDFG R GL+DRK+APGTANFC+GPAM+  QC AA+ AG++F ++LQADVLG
Sbjct: 106 HIVDAGVNHDFGVRPGLVDRKVAPGTANFCRGPAMSQAQCAAAMEAGMRFVDTLQADVLG 165

Query: 131 FGEMGIGNTTAAAALMAAFTGVPVQECVGAGTGLDAQGVARKADAVTRALRLHAQASAPL 190
           FGEMGIGNTTAAAALMAA TG+ VQ+CVGAGTGLDAQGV+RKADA+TRAL+LHAQA  PL
Sbjct: 166 FGEMGIGNTTAAAALMAALTGIAVQDCVGAGTGLDAQGVSRKADAITRALQLHAQAQTPL 225

Query: 191 ERLAALGGFEIAFMTGAMLGTAQRRKVILIDGFIVTSALLVAAALQPAVLEYCVFSHCSD 250
           ERLAALGGFEIAFM GAML  AQRR V++IDGFIVTSALLVAAALQP VLEYCVFSHCSD
Sbjct: 226 ERLAALGGFEIAFMCGAMLRGAQRRMVLVIDGFIVTSALLVAAALQPVVLEYCVFSHCSD 285

Query: 251 EAGHRRMLQYLGATPLMQLDLRLGEGTGAALALPLLRAAVNFLERMATFSSASVSEKH 308
           EAGH RML +LGA  LMQLDLRLGEGTGAALALPLL+AAVNFL  MATFSSASVS KH
Sbjct: 286 EAGHGRMLAHLGARALMQLDLRLGEGTGAALALPLLQAAVNFLADMATFSSASVSGKH 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 798,202
Number of extensions: 28426
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)