BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0053.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311280|ref|YP_003775372.1| phosphoglycerate mutase 2 prote...   182   1e-47

>gi|300311280|ref|YP_003775372.1| phosphoglycerate mutase 2 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  182 bits (463), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 138/206 (66%), Gaps = 10/206 (4%)

Query: 1   MLLNLIRHPQPLMDKSTCYGRSDIAVAPEM---LAQSVAQLLPQLQALPPDWPLVSSPLQ 57
           M L LIRHP+P +D+  CYG SD+ VA E+      ++   L Q+Q  P    +V+SPL+
Sbjct: 1   MALLLIRHPRPRIDQGHCYGSSDVEVADEVWQASLAALLPSLLQVQQWPQRAAIVTSPLR 60

Query: 58  RCAQLAQSLGQAMQRPAPDIDPRLQEMDFGKWELRPWDDIPWAEVEAWNADLAHYAPGGG 117
           RCA LAQ+L  A+++P   ++P L+EMDFG WELR WDDI W+EVEAWN DL HYAPGGG
Sbjct: 61  RCAVLAQALADALRQPLV-VEPDLREMDFGAWELRAWDDIAWSEVEAWNQDLLHYAPGGG 119

Query: 118 ETLTAVASRMWQAFNDL---LATPAEGV---IVICHAGTIRMLHACAAWRAGQGAAARTD 171
           ETL AVA RMW+A+  L       A+GV   IV+CHAG+IRML ACAAW+AGQ  A+  D
Sbjct: 120 ETLPAVARRMWRAWERLRRHAQAEADGVSDLIVVCHAGSIRMLRACAAWQAGQLQASAPD 179

Query: 172 IAAFSDIALRAAAHRAEIPYARLLAL 197
            AA   IAL A   R EI Y  ++ L
Sbjct: 180 AAALEAIALLAVQERGEIAYGEVMRL 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 588,375
Number of extensions: 21541
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)