BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0049.p
         (689 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311283|ref|YP_003775375.1| carbon starvation A transmembra...  1313   0.0  

>gi|300311283|ref|YP_003775375.1| carbon starvation A transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 689

 Score = 1313 bits (3397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/689 (96%), Positives = 677/689 (98%)

Query: 1   MNRLVSRLGWLAVALGGAGACAYVALQRGESINAVWLVVASVCVYLIAYRFYSKFIAERV 60
           MNR+VSRLGWLA+AL GAGACAYVALQRGESINAVWLVVA+VCVYLIAYRFYSKFIA+RV
Sbjct: 1   MNRIVSRLGWLALALAGAGACAYVALQRGESINAVWLVVAAVCVYLIAYRFYSKFIADRV 60

Query: 61  LGLDGARMTPAYKFNDGLDYVPTNKYVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMLWI 120
           LGLDG RMTPAYKFNDGLDYVPTNKYVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMLWI
Sbjct: 61  LGLDGGRMTPAYKFNDGLDYVPTNKYVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMLWI 120

Query: 121 LAGVVFAGAVQDFMVLFISTRRDGRSLGDLIKSELGQVPGVIALFGAFMIMVIILAVLAL 180
           LAGVVFAGAVQDFMVLFISTRRDGRSLGDLIKSELGQVPGVIALFGAFMIMVIILAVLAL
Sbjct: 121 LAGVVFAGAVQDFMVLFISTRRDGRSLGDLIKSELGQVPGVIALFGAFMIMVIILAVLAL 180

Query: 181 IVVKALAESPWGTFTVAATIPIALFMGVYSRYIRPGRIGEVSWIGFVLLMLAIVGGQYVQ 240
           IVVKALAESPWG+FTVAATIPIALFMGVYSRYIRPGRIGEVSWIGFVLLMLAIVGGQYVQ
Sbjct: 181 IVVKALAESPWGSFTVAATIPIALFMGVYSRYIRPGRIGEVSWIGFVLLMLAIVGGQYVQ 240

Query: 241 EHAVLGQMFTFNGKQLTWMLIGYGFVASVLPVWLLLAPRDYLSTFLKIGTIVALALGIIF 300
           EH  LGQMFTF+GKQLTWMLIGYGFVASVLPVWLLLAPRDYLSTFLKIGTI+ALALGI+F
Sbjct: 241 EHPALGQMFTFDGKQLTWMLIGYGFVASVLPVWLLLAPRDYLSTFLKIGTILALALGIVF 300

Query: 301 IAPHLKMHAVTRFIDGSGPVWSGSLFPFLFITIACGAVSGFHALISSGTTPKLLENEKHA 360
           IAPHLKMHAVTRFIDGSGPVWSGSLFPFLFITIACGAVSGFHALISSGTTPKLLENEKHA
Sbjct: 301 IAPHLKMHAVTRFIDGSGPVWSGSLFPFLFITIACGAVSGFHALISSGTTPKLLENEKHA 360

Query: 361 RFIGYGAMLMESFVAIMALIAASCIEPGIYFAMNSPAALIGTTPENVAQVISQWGFHITP 420
           RFIGYGAMLMESFVAIMALIAASCIEPGIYFAMNSPAALIGTTPENVAQVISQWGFHITP
Sbjct: 361 RFIGYGAMLMESFVAIMALIAASCIEPGIYFAMNSPAALIGTTPENVAQVISQWGFHITP 420

Query: 421 EMLTHTAQAVGEHTIISRAGGAPTLAVGMAQILSGVTGEAMMAFWYHFAILFEALFILTA 480
           EMLTHTAQAVGEHTIISRAGGAPTLAVGMAQILSGVTGEAMMAFWYHFAILFEALFILTA
Sbjct: 421 EMLTHTAQAVGEHTIISRAGGAPTLAVGMAQILSGVTGEAMMAFWYHFAILFEALFILTA 480

Query: 481 VDAGTRAGRFMLQDLLGAFIPPMKRTDSWAASLIATGLCVTGWGYFLYQGVVDPLGGINT 540
           VDAGTRAGRFMLQDLLGAFIPPMKRTDSW ASLIATGLCV GWGYFLYQGVVDPLGGINT
Sbjct: 481 VDAGTRAGRFMLQDLLGAFIPPMKRTDSWVASLIATGLCVAGWGYFLYQGVVDPLGGINT 540

Query: 541 LWPLFGISNQMLAGIALILATCVLFKMKRDRFAWVTVVPTTWLLICTLTAGWQKVFDANP 600
           LWPLFGISNQMLAGIALILATCVLFKMKRDRFAWVTV+PT WLL CTLTAGWQKVFDANP
Sbjct: 541 LWPLFGISNQMLAGIALILATCVLFKMKRDRFAWVTVLPTAWLLACTLTAGWQKVFDANP 600

Query: 601 RVGFLAHAQKYQAALDEGKLLAPAKSIEQMRQVIFNDYVDAGLAAMFMLVVVSVLVFGIR 660
           RVGFLAHA KYQAALDEGKLLAPAKSIEQMRQVIFNDYVDAGLAAMFMLVV+SVLVFGIR
Sbjct: 601 RVGFLAHASKYQAALDEGKLLAPAKSIEQMRQVIFNDYVDAGLAAMFMLVVISVLVFGIR 660

Query: 661 TVLKARAAHQPSVKESAYEALPASAVAPQ 689
           TVLKAR+AHQPSVKE+ YE LPASA+A Q
Sbjct: 661 TVLKARSAHQPSVKEAPYETLPASALAQQ 689


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,089,123
Number of extensions: 87465
Number of successful extensions: 406
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 597
Effective length of database: 1,184,250
Effective search space: 706997250
Effective search space used: 706997250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 134 (56.2 bits)