BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0043.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311285|ref|YP_003775377.1| heat shock HtpX protein [Herbas...   353   8e-99
gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspiril...   262   2e-71

>gi|300311285|ref|YP_003775377.1| heat shock HtpX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  353 bits (905), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 173/179 (96%), Positives = 176/179 (98%)

Query: 1   MKRIVLFLVTNLAVMLVLSFTASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS 60
           MKR++LFLVTNLAVMLVLS TASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS
Sbjct: 1   MKRVILFLVTNLAVMLVLSVTASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS 60

Query: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQTLATRAQLPMPEVAVYDGPPNAFATGASKSN 120
           KTIAKWSTGARVIEQPQNSTELWLLQTVQ LA RAQLPMPEVAVYDGPPNAFATGASKSN
Sbjct: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQNLAARAQLPMPEVAVYDGPPNAFATGASKSN 120

Query: 121 SLVAVSTGLLQGMTKEEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFV 179
           SLVAVSTGLLQGMTK+EVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFV
Sbjct: 121 SLVAVSTGLLQGMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFV 179


>gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspirillum
           seropedicae SmR1]
          Length = 291

 Score =  262 bits (669), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/179 (72%), Positives = 153/179 (85%)

Query: 1   MKRIVLFLVTNLAVMLVLSFTASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS 60
           MKRI+LF+ TN+AV++V+S   SLLGV+R+LT +GLN  MLLVF  ++GF GS ISL MS
Sbjct: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLLVFSLVVGFTGSIISLLMS 60

Query: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQTLATRAQLPMPEVAVYDGPPNAFATGASKSN 120
           KT+AKWSTGARVI+ P N TE WLLQTV  LA RA + MPEVAVYDG PNAFATGA + +
Sbjct: 61  KTMAKWSTGARVIQTPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120

Query: 121 SLVAVSTGLLQGMTKEEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFV 179
           +LVAVSTGLLQGMT++EVEAVL HEVAHIANGDMVT+TLIQGVVNTFV+F +R+VG+FV
Sbjct: 121 ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGFFV 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 468,347
Number of extensions: 16466
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)