BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0042.p
         (76 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311285|ref|YP_003775377.1| heat shock HtpX protein [Herbas...   140   2e-35
gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspiril...    97   3e-22

>gi|300311285|ref|YP_003775377.1| heat shock HtpX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  140 bits (352), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 72/76 (94%)

Query: 1   MYFSRQREYRADAGAAALMGSKVPMMNALRRLGGLQSDGLPQNLQASGISGRESWLGLFS 60
           MYFSRQREYRADAGAA+LMGS  PM+NALRRLGG+QSDGLPQNLQA+GISGRESW+GLFS
Sbjct: 217 MYFSRQREYRADAGAASLMGSNAPMINALRRLGGMQSDGLPQNLQAAGISGRESWMGLFS 276

Query: 61  SHPPLESRIAALQAAR 76
           SHP LESRIAALQ+ R
Sbjct: 277 SHPSLESRIAALQSRR 292


>gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspirillum
           seropedicae SmR1]
          Length = 291

 Score = 97.1 bits (240), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 57/75 (76%)

Query: 2   YFSRQREYRADAGAAALMGSKVPMMNALRRLGGLQSDGLPQNLQASGISGRESWLGLFSS 61
           +FSR RE+RADAGAA L+G+  PM+NAL RLGG   +GLPQNL A GIS +   + LFS+
Sbjct: 217 WFSRHREFRADAGAARLLGTPQPMINALARLGGFSPEGLPQNLAALGISDKPGVMELFST 276

Query: 62  HPPLESRIAALQAAR 76
           HPPLE RIAAL+  R
Sbjct: 277 HPPLEQRIAALRGQR 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 244,887
Number of extensions: 8401
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 76
Length of database: 1,619,870
Length adjustment: 47
Effective length of query: 29
Effective length of database: 1,397,325
Effective search space: 40522425
Effective search space used: 40522425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)