BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0040.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine ...   292   1e-80
gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine ...    61   6e-11

>gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  292 bits (747), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/169 (91%), Positives = 161/169 (95%), Gaps = 2/169 (1%)

Query: 6   QSHLSAVPSHHGQRIAFVQASWHKDIVDQCRIAFTEEMAKVGWPTSSIDFFELPGAFEIP 65
           QSHLSAV SHHGQRIAF+QA WHKDIVDQCRIAFTEEMAK+GWP +SIDFFELPGAFEIP
Sbjct: 3   QSHLSAVSSHHGQRIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFEIP 62

Query: 66  LHAKVLAKTGKYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLETEVPVFSAVLTPHH 125
           LHAKVLAKTG+YAGIVASGLVVDGGIYRHDFVAQSVISALMQVQL+TEVPVFSAVLTPHH
Sbjct: 63  LHAKVLAKTGRYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLTPHH 122

Query: 126 FHSHSEHHDYFHQHFLVKGREAAHACATTVAKLAEVRAADAAQRSLNAA 174
           FHSHSEHHDYFHQHFLVKGREAA ACATTVAKLA+VRA   AQ SLNAA
Sbjct: 123 FHSHSEHHDYFHQHFLVKGREAAQACATTVAKLAQVRA--GAQASLNAA 169


>gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score = 60.8 bits (146), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 10/149 (6%)

Query: 13  PSHHGQ--RIAFVQASWHKDIVDQCRIAFTEEMAKVGWPTSSIDFFELPGAFEIPLHAKV 70
           P  +G+  RI  VQA +++D+      A   E+  +G     I    +PGA EIPL  + 
Sbjct: 8   PDFNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIPLALQK 67

Query: 71  LAKTGKYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLETEVPVFSAVLTPHHFHSHS 130
           +A+T ++  ++A G V+ G  Y  + V+    + + ++ L+  VP+ +AVLT       +
Sbjct: 68  MAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLT-------T 120

Query: 131 EHHDYFHQHFLVKGREAAHACATTVAKLA 159
           E+ +        KG +AA   A  +A LA
Sbjct: 121 ENDEQAEVRMAEKGADAAR-VAVEMANLA 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,216
Number of extensions: 15170
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)