BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0039.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311289|ref|YP_003775381.1| lipoprotein protein [Herbaspiri...   323   5e-90

>gi|300311289|ref|YP_003775381.1| lipoprotein protein
           [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  323 bits (829), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 160/186 (86%), Positives = 166/186 (89%), Gaps = 1/186 (0%)

Query: 1   MPRPRFSVPFFVITAATLGLTACTTGKTAFYHQEEFNDTSAFSRSFPGSEKAVCEAARRA 60
           M  PR  V        +L L AC T K AFYHQEEF+DTSAFSRSFPGSEKAVCEAARRA
Sbjct: 1   MLHPRLPVSLCFAATLSLTLAACGT-KAAFYHQEEFSDTSAFSRSFPGSEKAVCEAARRA 59

Query: 61  LLGQGYVISKSTDNTLDGNKSFQPASDKHMEIAFHVVCASNGNGKSSTMFASATQDGYGI 120
           LLGQGY+I+K+TDNT+DGNKSFQPASDKHMEIAFHVVCASNGNGKSSTMF SATQDGYGI
Sbjct: 60  LLGQGYIITKATDNTMDGNKSFQPASDKHMEIAFHVVCASNGNGKSSTMFVSATQDGYGI 119

Query: 121 KKSNSSASLGVSVLGSVSMPFAASDDSMVRVSSETIRSPDFYDRFFGAAERYLLVDVDDD 180
           KKSNSSASLGVSVLGSVSMPFAASDDSMVRVSSETIRS DFYDRFFGAAERYLLVDVDDD
Sbjct: 120 KKSNSSASLGVSVLGSVSMPFAASDDSMVRVSSETIRSSDFYDRFFGAAERYLLVDVDDD 179

Query: 181 TAPAKK 186
           TAP KK
Sbjct: 180 TAPGKK 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 464,429
Number of extensions: 13972
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)