BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0036.p
         (74 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein ...   151   9e-39
gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein ...    53   4e-09

>gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  151 bits (382), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 73/74 (98%), Positives = 74/74 (100%)

Query: 1   VLGHIDRLLAEAGSDKTKILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLAR 60
           VLGHIDRLLAEAGSDK+KILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLAR
Sbjct: 43  VLGHIDRLLAEAGSDKSKILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLAR 102

Query: 61  PELLVEIIIVAAQK 74
           PELLVEIIIVAAQK
Sbjct: 103 PELLVEIIIVAAQK 116


>gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score = 53.1 bits (126), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 1   VLGHIDRLLAEAGSDKTKILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLAR 60
           VL  ID  L   G  + +I+S  ++LS  + FA  NAVW+ W+  G+AP RA V+A L  
Sbjct: 44  VLAKIDAQLQAQGIGRERIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLML 103

Query: 61  PEL 63
           P L
Sbjct: 104 PGL 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 245,284
Number of extensions: 8318
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 74
Length of database: 1,619,870
Length adjustment: 45
Effective length of query: 29
Effective length of database: 1,406,795
Effective search space: 40797055
Effective search space used: 40797055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)