BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0034.p
         (795 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313843|ref|YP_003777935.1| Type I restriction-modification...   113   7e-26

>gi|300313843|ref|YP_003777935.1| Type I restriction-modification
           system methyltransferase subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 860

 Score =  113 bits (282), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 156/323 (48%), Gaps = 54/323 (16%)

Query: 180 MGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPIADRIESSTYSLYDGSCGTG 239
           +G ++E LI  F  +  ++AGE +TP +V  LM++++   + DR    T  +YD + G+G
Sbjct: 165 LGFIYEYLISMFAANAGKKAGEFYTPHEVSVLMSEIIAHHLKDR---KTIQIYDSTSGSG 221

Query: 240 GMLTVAEEALHELAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGEEAENIVGGADR 299
            +L    +A+   A+    + +I  F QE+ + TY + + +L+++G      NIV   + 
Sbjct: 222 SLLLNIGQAI---AKHMVDKDNIKYFAQELKENTYNLTRMNLVMRGI--LPSNIVT-RNA 275

Query: 300 STLSAD-----------QFRSREFDFMISNPPYGKSWKTDLERMGGKKEFNDPRFIVSHA 348
            TL  D            +     D ++SNPPY + W  + +         DPR+     
Sbjct: 276 DTLEDDWPYFDDQDPVNSYNPLYLDAVVSNPPYSQKWDPEHKEA-------DPRY----- 323

Query: 349 GEAEYKLITRSSDGQLMFLVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRW 408
             A + L  +S      FL++ L  +K   P G  +A+V     LF G     E  IR+ 
Sbjct: 324 --ARFGLAPKSK-ADYAFLLHDLYHLK---PDGI-MAIVLPHGVLFRGGE---EGAIRKT 373

Query: 409 VLENDWLEAIIALPLNIFYNTGIATYIWVLANRKAPRRKGKVQLIDASQWSEPLRRNLGK 468
           ++EN+ LE II LP NIF+ TGI T I VL  +   R    V ++DAS       +   K
Sbjct: 374 LIENNHLETIIGLPSNIFFGTGIPTIILVLRQK---RESSDVLIVDAS-------KGFAK 423

Query: 469 --KNCELSADDIQRIMDLYLGEI 489
             KN +L A DI++I D+  G +
Sbjct: 424 EGKNNKLRACDIKKIADVVTGRL 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,377,048
Number of extensions: 98447
Number of successful extensions: 269
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 1
Length of query: 795
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 702
Effective length of database: 1,179,515
Effective search space: 828019530
Effective search space used: 828019530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)