BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0029.p (290 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin sub... 534 e-153 gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspiril... 263 1e-71 gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylas... 216 2e-57 gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum... 198 3e-52 >gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin subunit [Herbaspirillum seropedicae SmR1] Length = 462 Score = 534 bits (1376), Expect = e-153, Method: Compositional matrix adjust. Identities = 272/290 (93%), Positives = 276/290 (95%) Query: 1 MARDAAELAREFPLAQGEAQAAFGSGAVYLERFIRRARHIEVQILGDGERAVHLFERECS 60 MARDA ELAREFPLAQ EAQAAFGS AVYLERFIRRARHIEVQILGDGERAVHLFERECS Sbjct: 173 MARDATELAREFPLAQAEAQAAFGSAAVYLERFIRRARHIEVQILGDGERAVHLFERECS 232 Query: 61 LQRRRQKVFEEAPSPALTPQQRQALCDSAVRLAARLRYRGAGTLEYLFDDESGEFFFIEM 120 LQRRRQKV EEAPSPALTP QRQALCDSAVRLA RL YRGAGTLEYLFDDESGEFFFIEM Sbjct: 233 LQRRRQKVLEEAPSPALTPAQRQALCDSAVRLAERLHYRGAGTLEYLFDDESGEFFFIEM 292 Query: 121 NTRIQVEHPVTEMITGIDLVQAMLRIAGGEPLGLQQSDIRMQGAALEMRINAEDPERNFF 180 NTRIQVEHPVTEMITGIDLVQAMLRIAGGEPLGLQQSDIRMQGAALEMRINAEDPERNFF Sbjct: 293 NTRIQVEHPVTEMITGIDLVQAMLRIAGGEPLGLQQSDIRMQGAALEMRINAEDPERNFF 352 Query: 181 PCPGTVAELQWPQGEGVRVESHLYAGYRIPPYYDSLLAKLVVHGKDRAQAIARAQAAVAA 240 PCPGTVAELQWPQGEG+RVESHLYAGYRIPPYYDSLLAKLVVHGKDRAQAIARAQAAV A Sbjct: 353 PCPGTVAELQWPQGEGIRVESHLYAGYRIPPYYDSLLAKLVVHGKDRAQAIARAQAAVLA 412 Query: 241 THITGMATTLPLHQWLLADARVQAARFDTGALESWLAERANARTAQLEEA 290 T ITGMATTL LHQWLLADARVQ+ARFDTGALE+WLAER + R QLEEA Sbjct: 413 TRITGMATTLSLHQWLLADARVQSARFDTGALETWLAERTDTRAKQLEEA 462 >gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 263 bits (671), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/275 (46%), Positives = 184/275 (66%), Gaps = 4/275 (1%) Query: 6 AELAREFPLAQGEAQAAFGSGAVYLERFIRRARHIEVQILGDGER-AVHLFERECSLQRR 64 A L + + EA AAFG+ VY+E+++ RH+E+QIL D + A+ L ER+CS+QRR Sbjct: 176 AALINAVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDCSMQRR 235 Query: 65 RQKVFEEAPSPALTPQQRQALCDSAVRLAARLRYRGAGTLEYLFDDESGEFFFIEMNTRI 124 QKV EEAP+P + + + + + ++ YRGAGT E+L+++E EF+FIEMNTR+ Sbjct: 236 HQKVIEEAPAPGIPRKIIEKIGERCAEACRKMNYRGAGTFEFLYENE--EFYFIEMNTRV 293 Query: 125 QVEHPVTEMITGIDLVQAMLRIAGGEPLGLQQSDIRMQGAALEMRINAEDPERNFFPCPG 184 QVEHPVTEMITG+D+VQ +RIA GE L +Q DI ++G A+E RINAEDP + F P PG Sbjct: 294 QVEHPVTEMITGVDIVQEQIRIAAGEKLRYRQRDIELKGHAIECRINAEDPFK-FIPSPG 352 Query: 185 TVAELQWPQGEGVRVESHLYAGYRIPPYYDSLLAKLVVHGKDRAQAIARAQAAVAATHIT 244 + P G G+RV+SH Y+GY +PP YDS++ K++ +G R QAI R Q A++ + Sbjct: 353 RITAWHVPGGPGIRVDSHAYSGYFVPPNYDSMVGKVIAYGATREQAIRRMQIALSEMVVE 412 Query: 245 GMATTLPLHQWLLADARVQAARFDTGALESWLAER 279 G++T +PLH+ L+ DAR + LE L+ER Sbjct: 413 GISTNIPLHRELMVDARFFEGGTNIHYLEHKLSER 447 >gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 671 Score = 216 bits (550), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 119/270 (44%), Positives = 176/270 (65%), Gaps = 15/270 (5%) Query: 18 EAQAAFGSGAVYLERFIRRARHIEVQILGDGE-RAVHLFERECSLQRRRQKVFEEAPSPA 76 EA A+FG V +E+++ R RHIE+Q+ DG V+LFER+CS+QRR QKV EEAP+P Sbjct: 187 EAIASFGDDRVLVEKYLTRPRHIEIQVFADGHGHCVYLFERDCSVQRRHQKVLEEAPAPG 246 Query: 77 LTPQQRQALCDSAVRLAARLRYRGAGTLEYLFDDESGEFFFIEMNTRIQVEHPVTEMITG 136 ++ ++R A+ ++AV A + Y GAGT+E++ + + G F+F+EMNTR+QVEHPVTEMITG Sbjct: 247 MSEERRAAMGEAAVAAARAVGYVGAGTVEFIAN-QDGSFYFMEMNTRLQVEHPVTEMITG 305 Query: 137 IDLVQAMLRIAGGEPLGLQQSDIRMQGAALEMRINAEDPERNFFPCPGTV------AELQ 190 +DLV+ LR+A G+ L L+Q +R+ G A+E RI AE+PE+ F P GT+ A ++ Sbjct: 306 LDLVEWQLRVAAGQALPLKQEQLRIHGHAIEARIYAENPEKGFLPAIGTLTRMRSAAAVE 365 Query: 191 WPQGEG-------VRVESHLYAGYRIPPYYDSLLAKLVVHGKDRAQAIARAQAAVAATHI 243 + G+ VR+++ + G I P+YD ++AKL+V G DR A+ Q A+A + Sbjct: 366 FRLGQSAPGDPAHVRIDAGVREGDAISPFYDPMIAKLIVWGPDRDAALRNMQRALAQYQV 425 Query: 244 TGMATTLPLHQWLLADARVQAARFDTGALE 273 G+AT + Q L+A A DTG +E Sbjct: 426 VGLATNIAFLQRLVAGQAFSTAALDTGLIE 455 >gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1] Length = 1207 Score = 198 bits (504), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 150/226 (66%), Gaps = 5/226 (2%) Query: 1 MARDAAELAREFPLAQGEAQAAFGSGAVYLERFIRRARHIEVQILGDGE-RAVHLFEREC 59 + R AELA F + Q F V++E++I RARH+EVQ+ GDG + L R+C Sbjct: 169 VCRSDAELADAFDSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGRGEVIALGVRDC 228 Query: 60 SLQRRRQKVFEEAPSPALTPQQRQALCDSAVRLAARLRYRGAGTLEYLFDDESGEFFFIE 119 S+QRR QKV EE P+P L +ALC +A++LA + YR AGT+E+++D +G+F+F+E Sbjct: 229 SVQRRNQKVLEETPAPNLPDGMAEALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLE 288 Query: 120 MNTRIQVEHPVTEMITGIDLVQAMLRIAGGE--PLGLQQSDIRMQGAALEMRINAEDPER 177 +NTR+QVEH VTE + G+DLV+ M+ +A G+ PL + ++ +G A++ R+ AEDP R Sbjct: 289 VNTRLQVEHGVTEQVWGVDLVRWMIELAAGDLPPLAQLAAGLQPRGHAIQARLYAEDPGR 348 Query: 178 NFFPCPGTVAELQWP--QGEGVRVESHLYAGYRIPPYYDSLLAKLV 221 F PCPG + + +P G+ +R+++ + AG I PY+D ++AKL+ Sbjct: 349 QFQPCPGLLTAVDFPPVDGQALRIDTWVEAGCEIAPYFDPMIAKLI 394 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 832,892 Number of extensions: 31554 Number of successful extensions: 126 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 4 Length of query: 290 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 206 Effective length of database: 1,222,130 Effective search space: 251758780 Effective search space used: 251758780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)