BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0028.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1...   563   e-162
gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum...    86   3e-18
gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1...    63   2e-11

>gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  563 bits (1452), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/299 (93%), Positives = 290/299 (96%)

Query: 1   MNRTQASPATPIRYSIAGDEHLFAEVSESMSLEAFFRAMAITRAVEQLALPGVLDVCLAN 60
           MNR Q +P TPIRYSIAGDEHLFAEVSESMSLEAFFRAMAITRAVE+LALPGVLDVCLAN
Sbjct: 1   MNRLQTTPVTPIRYSIAGDEHLFAEVSESMSLEAFFRAMAITRAVEKLALPGVLDVCLAN 60

Query: 61  ASFQIRFDPDLIHPLALLEQVKALESSTTAERRIDTRIIEVPVLYDDPWTNETQARFRDR 120
           ASFQIRF+PDLIHPLALLEQ++ALESSTTAERRIDTRIIEVPVLYDDPWTNETQ+RFRDR
Sbjct: 61  ASFQIRFNPDLIHPLALLEQLEALESSTTAERRIDTRIIEVPVLYDDPWTNETQSRFRDR 120

Query: 121 HQDPASTDLQYAARINGYEEVQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVP 180
           HQDP+STDLQYAARINGY+E QAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVP
Sbjct: 121 HQDPSSTDLQYAARINGYDETQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVP 180

Query: 181 KYLRPRTDTPKLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLQESMVFFR 240
           KYLRPRTDTPKLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYL+ESMVFFR
Sbjct: 181 KYLRPRTDTPKLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLRESMVFFR 240

Query: 241 AGDIVQFKAIDRSAYDAAIAAVDAGRFDLRIRPARFDLDAFQADPQACIHALKEALHDD 299
           AGDIVQFK IDR+AYDAAI  V+AGRFDLRIR  RFDLDAFQADPQACIHALKEALHDD
Sbjct: 241 AGDIVQFKPIDRTAYDAAIVEVEAGRFDLRIRAVRFDLDAFQADPQACIHALKEALHDD 299


>gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum
            seropedicae SmR1]
          Length = 1207

 Score = 85.9 bits (211), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 126/274 (45%), Gaps = 9/274 (3%)

Query: 16   IAGDEHLFAEV-SESMSLEAFFRAMAITRAVEQLALPGVLDVCLANASFQIRFDPDLIHP 74
            ++GD +L  EV S  + L   FR  A+  A+E+ ALPGV+D+     S Q+ + P+ +  
Sbjct: 805  LSGDANLLLEVGSPQLDLVLRFRVHALITALEEQALPGVIDLTPGIRSLQVHYQPEALPL 864

Query: 75   LALLEQVKALESSTTAERR--IDTRIIEVPVLYDDPWTNETQARFRD--RHQDP-ASTDL 129
              LL+ +  L  +  A     + +RI+ +P+ +DDP       ++    R   P   ++L
Sbjct: 865  PTLLQTIAGLWDAVCASENLTVSSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNL 924

Query: 130  QYAARINGYEEVQAFIAAHSGTPWFVSMVGFV-AGLPFMYQMVEQDRQLQVPKYLRPRTD 188
            ++  RIN  +++ A         + V  +G V  G P    +  + R L   KY   RT 
Sbjct: 925  EFIRRINDLKDIGAVRETVFDASYLVMGLGDVYLGAPVATPLDPRHR-LVTTKYNPARTW 983

Query: 189  TPKLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLQESMVFFRAGDIVQFK 248
            T + ++G GG + CIY + G GGYQ  G T   +++  + +   +      R  D ++F 
Sbjct: 984  TAENSVGIGGAYLCIYGMEGPGGYQFVGRT-LQMWNRYREVAAFRGKPWLLRFFDQIRFY 1042

Query: 249  AIDRSAYDAAIAAVDAGRFDLRIRPARFDLDAFQ 282
             +              GRF++ I   + +L  +Q
Sbjct: 1043 PVTAEELQTIRRDFPLGRFEVGIEETQLNLADYQ 1076


>gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 77  LLEQVKALESSTTAERRIDTRIIEVPVLYDDPWTNETQARFRDRHQDPASTDLQYAARIN 136
           L  +++      + ER +  R +E+PV+Y                   A  DL   AR  
Sbjct: 66  LAHRIETTWPKLSGERSVG-RTVEIPVVYGGS----------------AGPDLDNVARHT 108

Query: 137 GYEEVQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTPKLTLGH 196
           G    +  IA HS   + V  +GF+ G  +M  +   D  L  P++  PR   P  ++G 
Sbjct: 109 GLS-TEEVIARHSNAEYVVYFLGFLPGFAYMGGL---DASLATPRHTTPRVSIPAGSVGI 164

Query: 197 GGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLQESMVFFRAGDIVQFKAIDRSA 254
           GG    +Y +   GG+Q+ G T   ++DP Q  P L       R GD V+F  ++R A
Sbjct: 165 GGEQTGVYPMASPGGWQLIGRTTLQLFDPSQEPPTL------LRPGDRVRF-TVERVA 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 905,476
Number of extensions: 35528
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)