BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0024.p (277 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 479 e-136 gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC t... 297 6e-82 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 295 3e-81 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 217 8e-58 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 213 1e-56 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 479 bits (1232), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/263 (91%), Positives = 251/263 (95%) Query: 1 MMTAATIMNAASVESEVRAASAPLLLEVSGLSARYGKVPALTEAALSLRAGQIVTVIGPN 60 MMTAAT+M AS E EVRA +AP+LLEVSGLSARYGKV ALT+ ALSLRAGQIVTVIGPN Sbjct: 1 MMTAATVMPHASAEPEVRATTAPVLLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPN 60 Query: 61 GAGKSTLLNAMMGAMPAGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTSMSV 120 GAGKSTLLNAMMGA+P+GAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFT+M+V Sbjct: 61 GAGKSTLLNAMMGALPSGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTV 120 Query: 121 EDNLLLGAYKRRRNGESGYLDQQEFVYALFPRLKERRKQAAGTLSGGERQMLAVGRALMA 180 EDNLLLGAYKR RNGESGYLDQQ+FVY LFPRLKERRKQAAGTLSGGERQMLAVGRALMA Sbjct: 121 EDNLLLGAYKRHRNGESGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMA 180 Query: 181 KPQVLMLDEPSLGLAPLITKEILSIISQLRSTGVATLLVEQNARAALQVAEYGYVLEMGE 240 KPQVLMLDEPSLGLAPLIT+EILSIISQLRSTGVATLLVEQNARAALQVA+YGYVLEMGE Sbjct: 181 KPQVLMLDEPSLGLAPLITREILSIISQLRSTGVATLLVEQNARAALQVADYGYVLEMGE 240 Query: 241 IVCEGPAGVLAADKRIVESYLGV 263 IVC GPAGVLA D RIVESYLGV Sbjct: 241 IVCAGPAGVLAEDSRIVESYLGV 263 >gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 297 bits (760), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 147/243 (60%), Positives = 189/243 (77%), Gaps = 4/243 (1%) Query: 24 LLLEVSGLSARYGKVPALTEAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASG 83 L+L+V+ L A YGKV AL + L L G I TVIGPNGAGKSTLLNA+MG +PA G Sbjct: 4 LVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPA----QG 59 Query: 84 RIAFQGEDVSQMEVEERVARGLSLVPEKRELFTSMSVEDNLLLGAYKRRRNGESGYLDQQ 143 + +QG V + +E+RV G++LVPE+RELF++MSVEDNLLLG ++R R ++ LDQ Sbjct: 60 TVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQL 119 Query: 144 EFVYALFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEIL 203 V+ LFPRLKERR Q AGTLSGGERQMLA+GRA+MAKPQ+LMLDEPSLGLAP I KEIL Sbjct: 120 ATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEIL 179 Query: 204 SIISQLRSTGVATLLVEQNARAALQVAEYGYVLEMGEIVCEGPAGVLAADKRIVESYLGV 263 I+S+LR+ G++ LLVEQNARAALQ A+YGYVLE+G++ +G + LA D +++++YLG Sbjct: 180 HIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGF 239 Query: 264 ARE 266 ++ Sbjct: 240 GKK 242 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 295 bits (755), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 153/240 (63%), Positives = 185/240 (77%), Gaps = 4/240 (1%) Query: 25 LLEVSGLSARYGKVPALTEAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 +LEV LSA YGKV L LS+ G+IVTVIGPNGAGK+TLL+A+MG +P+ G Sbjct: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPS----RGA 60 Query: 85 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTSMSVEDNLLLGAYKRRRNGESGYLDQQE 144 +AF G EVEE VA G++LVPEKRELF M++EDNL+LGA++R R G+ + E Sbjct: 61 MAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE 120 Query: 145 FVYALFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILS 204 VY LFPRL+ERR Q AGTLSGGERQMLAVGRALMAKP++LMLDEPSLGLAPLI +EI Sbjct: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 Query: 205 IISQLRSTGVATLLVEQNARAALQVAEYGYVLEMGEIVCEGPAGVLAADKRIVESYLGVA 264 II++LR GV+ LLVEQNARAALQVA+YGYVLE G I GPA LA D+R++E+YLG++ Sbjct: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 217 bits (553), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 163/240 (67%), Gaps = 8/240 (3%) Query: 24 LLLEVSGLSARYGKVPALTEAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASG 83 ++L+ + YG + AL +L++ G+IVT+IG NGAGK+TLL + G P A+SG Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGR-PR--ASSG 57 Query: 84 RIAFQGEDVSQMEVEERVARGLSLVPEKRELFTSMSVEDNLLLGAYKRRRNG-ESGYLDQ 142 R+ F+G+D++Q++ E + RGL++ PE R +F S++V +NL +GA+ E G Sbjct: 58 RVIFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGI--- 114 Query: 143 QEFVYALFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEI 202 E+V+ LFPRLKER Q AGT+SGGE+QMLA+GRALM+KP++L+LDEP+LGLAPL+ +I Sbjct: 115 -EYVFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQI 173 Query: 203 LSIISQLRSTGVATLLVEQNARAALQVAEYGYVLEMGEIVCEGPAGVLAADKRIVESYLG 262 II +R +GV LVEQNA AL VA+ GYVLE G +V L A+ + ++YLG Sbjct: 174 FDIIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 213 bits (542), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 157/238 (65%), Gaps = 5/238 (2%) Query: 25 LLEVSGLSARYGKVPALTEAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 +L+V L+ YG + A+ +LSL G+I ++G NGAGKST L A+ G + A GR Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKA---QRGR 66 Query: 85 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTSMSVEDNLLLGAYKRRRNGESGYLDQQE 144 + G+D+ QM V G+ V E R T+++VE+NL LGAY R+ + G E Sbjct: 67 VLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKD--KDGVARDLE 124 Query: 145 FVYALFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILS 204 +VY+LFP LK R AG LSGGE+QMLA+GRALMAKP+VL+LDEPS+GLAPLI +EI Sbjct: 125 WVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFR 184 Query: 205 IISQLRSTGVATLLVEQNARAALQVAEYGYVLEMGEIVCEGPAGVLAADKRIVESYLG 262 I+ ++ TG+ LLVEQN R AL++A+ GYVLE G+IV E L + ++VE+YLG Sbjct: 185 IVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 716,231 Number of extensions: 27371 Number of successful extensions: 526 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 138 Length of query: 277 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 193 Effective length of database: 1,222,130 Effective search space: 235871090 Effective search space used: 235871090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)