BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0019.p (147 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313408|ref|YP_003777500.1| branched-chain amino acid ABC t... 202 1e-53 gi|300313298|ref|YP_003777390.1| branched-chain amino acid ABC t... 116 6e-28 gi|300310681|ref|YP_003774773.1| amino acid ABC transporter peri... 99 2e-22 >gi|300313408|ref|YP_003777500.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 381 Score = 202 bits (513), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/121 (95%), Positives = 118/121 (97%) Query: 22 MQFARPLLALALAGCALVAHADINVGVTVSTTGPAASLGIPEKNTIALLPATIAGQKINY 81 MQFARPLLALALAGCALVA ADINVGVTVSTTGPAASLGIPEKNTIALLP TIAG K+NY Sbjct: 1 MQFARPLLALALAGCALVARADINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNY 60 Query: 82 IVLDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAAEAQTPMISLAAAARI 141 I+LDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAA+AQTPMISLAAAARI Sbjct: 61 IILDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAADAQTPMISLAAAARI 120 Query: 142 V 142 V Sbjct: 121 V 121 >gi|300313298|ref|YP_003777390.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 381 Score = 116 bits (291), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 53/99 (53%), Positives = 74/99 (74%) Query: 32 ALAGCALVAHADINVGVTVSTTGPAASLGIPEKNTIALLPATIAGQKINYIVLDDASDTT 91 A+ CA +AHA++ +GV +S TGP + LGIP KN AL P TIAG+K+ I+LDDA+D T Sbjct: 14 AMLACAGIAHAELTIGVVMSLTGPGSGLGIPAKNGFALWPETIAGEKVKMIILDDATDPT 73 Query: 92 QAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAAEAQT 130 QA KNARR V+E+ VD+I+GS+ P ++++ +VA E QT Sbjct: 74 QASKNARRLVAEDKVDLIIGSAAVPPTLAIADVALETQT 112 >gi|300310681|ref|YP_003774773.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 98.6 bits (244), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 4/125 (3%) Query: 22 MQFARPLLALALAG-CALVAH---ADINVGVTVSTTGPAASLGIPEKNTIALLPATIAGQ 77 M R + A+ L G +L H A + VGV S+TGP + +GIP+KNT+ LLP I Sbjct: 1 MLHKRLIAAVVLLGMSSLAMHPALAQVKVGVVTSSTGPVSLVGIPQKNTVPLLPTKIGDL 60 Query: 78 KINYIVLDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAAEAQTPMISLAA 137 K+ YI LDDASD T++V ++ ++E+NVD I+G S SPN++ +I AEA P+++ Sbjct: 61 KVEYISLDDASDPTKSVTEIKKLIAEHNVDAIIGPSGSPNAMGVISFVAEAGVPLLAPVG 120 Query: 138 AARIV 142 A +V Sbjct: 121 TAAVV 125 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.336 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 311,646 Number of extensions: 8988 Number of successful extensions: 56 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 3 Length of query: 147 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 70 Effective length of database: 1,255,275 Effective search space: 87869250 Effective search space used: 87869250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)