BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0017.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313410|ref|YP_003777502.1| carbonic anhydrase/acetyltransf...   363   e-102
gi|300311056|ref|YP_003775148.1| carbonic anhydrase/acetyltransf...   115   3e-27
gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily ca...    70   9e-14

>gi|300313410|ref|YP_003777502.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 200

 Score =  363 bits (931), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/200 (88%), Positives = 187/200 (93%)

Query: 1   VPCYSIEGVIPVVDPAAYVHPTAVLIGDVIVGPDCYVGPAACLRGDFGRIVLERGANVQD 60
           +PCYSIEGVIPVVDP+AYVHPTAVLIGDVIVGPDCYVGP ACLRGDFGRIVL+RGANVQD
Sbjct: 1   MPCYSIEGVIPVVDPSAYVHPTAVLIGDVIVGPDCYVGPTACLRGDFGRIVLQRGANVQD 60

Query: 61  TCVVHGFPGHATVVGENGHIGHGAVLHSCTVERDALVGMNAVVMDEAVVGAQSIVAACAF 120
           TCV+HGFPGH TVV ENGHIGHGAVLHSCTV RDALVGMNAVVMDEAVVG Q+IVAACAF
Sbjct: 61  TCVIHGFPGHDTVVEENGHIGHGAVLHSCTVRRDALVGMNAVVMDEAVVGEQAIVAACAF 120

Query: 121 VRAGMQIPPRTLVAGLPAKVVRDLTEEEMAWKRAGTETYHDLAKRSLKSLREVSPLAQIE 180
           VRAGMQIPPRTL AGLPAKVVR+LT +EMAWK+AGT TY DL  R L SLREVSPL+QIE
Sbjct: 121 VRAGMQIPPRTLAAGLPAKVVRELTADEMAWKQAGTRTYQDLTVRCLASLREVSPLSQIE 180

Query: 181 ENRPSLAAPFVEPLIAARRA 200
           ENRP+LAAPFVEPLIAARRA
Sbjct: 181 ENRPALAAPFVEPLIAARRA 200


>gi|300311056|ref|YP_003775148.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 174

 Score =  115 bits (287), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 99/171 (57%)

Query: 4   YSIEGVIPVVDPAAYVHPTAVLIGDVIVGPDCYVGPAACLRGDFGRIVLERGANVQDTCV 63
           Y +E  IP +   A+V  ++ ++G V +     V     +RGD   I +   +NVQ+  V
Sbjct: 4   YQLEQDIPEIHDTAFVAESSTVVGKVKMEAHSSVWFNVAIRGDNELITIGENSNVQEGAV 63

Query: 64  VHGFPGHATVVGENGHIGHGAVLHSCTVERDALVGMNAVVMDEAVVGAQSIVAACAFVRA 123
           +H   G+  V+G+N  +GH A+LH CT+   AL+G+ AVV++ A +G   +V A A V  
Sbjct: 64  LHTDVGYPMVIGKNVTVGHQAMLHGCTIGEGALIGIQAVVLNGAKIGKNCLVGAGALVTE 123

Query: 124 GMQIPPRTLVAGLPAKVVRDLTEEEMAWKRAGTETYHDLAKRSLKSLREVS 174
           G + P  +L+ G PAK VR L+EE++A  RAGT++Y   A++    L+ ++
Sbjct: 124 GKEFPDNSLIIGAPAKAVRQLSEEDIARMRAGTDSYVQRAQQFKAKLKRIA 174


>gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily
           carbonic anhydrase/acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score = 70.5 bits (171), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 10/127 (7%)

Query: 11  PVVDPAAYVHPTAVLIGDVIVGPDCYVGPAACLR-------GDFGRIVLERGANVQDTCV 63
           P V  +AYV  TA+L G VIV  + ++GP A +R       G+   I++   +N+QD  V
Sbjct: 11  PQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIGAHSNIQDGVV 70

Query: 64  VHGFPGHATVVGENGHIGHGAVLHS-CTVERDALVGMNAVVMDEAVVGAQSIVAACAFVR 122
           +H   G A  +GE   I H A++H  CTV  DA +G N+V+ +   +GA  +V   A V 
Sbjct: 71  IHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFN-CSIGAGCVVRHNAVVD 129

Query: 123 AGMQIPP 129
            G  +PP
Sbjct: 130 -GCDLPP 135


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 693,362
Number of extensions: 29603
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)