BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0014.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313413|ref|YP_003777505.1| phenylacetic acid degradation p...   467   e-133

>gi|300313413|ref|YP_003777505.1| phenylacetic acid degradation
           protein [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  467 bits (1201), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 222/250 (88%), Positives = 235/250 (94%)

Query: 1   MTHKTDYVRRLGDNVLVLSQRLSEWCGKGPALEEDMALINVSLDLIGQARLWLAYAAELE 60
           MT KTDYVRRLGDNVLVLSQRL+EWCGKGPALEEDMALINVSLDLIGQARLWL+YAAELE
Sbjct: 1   MTQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELE 60

Query: 61  GAGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCESSDARI 120
           G GRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLC+SSDARI
Sbjct: 61  GQGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARI 120

Query: 121 AEIAQKCFKEVTYHVRRSTDLMIRLGDGSEESHRRMQEAIDALWMYTGELFTTDALDQAM 180
           AEIAQKCFKEVTYHVRRSTDLMIRLGDG+E+SHRRMQ AIDALWMYTGELF  DALDQAM
Sbjct: 121 AEIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAM 180

Query: 181 QAEGIAPDLAELQQKWQQHVTEVMREATLQLPASGLWMQSGGKQGRHTEHLGYLLAEMQF 240
           Q +G+A  L E+QQKW QHVT+V+ EATL++P +GLWMQSGGK GRHTEHLGYLLAEMQF
Sbjct: 181 QEQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQF 240

Query: 241 LQRTYPGASW 250
           LQR YPGA W
Sbjct: 241 LQRAYPGAQW 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 828,835
Number of extensions: 34352
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)