BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0013.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313414|ref|YP_003777506.1| phenylacetic acid degradation p...   281   2e-77

>gi|300313414|ref|YP_003777506.1| phenylacetic acid degradation
           protein [Herbaspirillum seropedicae SmR1]
          Length = 181

 Score =  281 bits (719), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/172 (77%), Positives = 149/172 (86%), Gaps = 5/172 (2%)

Query: 11  LQASIWEWLEAXGGKAIPDPEIPVISVVDLGIVRAVEVSDADAEAARCTVVITPTYSGCP 70
           L+A IW+WLEA     +PDPEIPV+SVVDLGIVR VE+  A A  ARCTVVITPTYSGCP
Sbjct: 15  LKARIWDWLEA-----VPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCP 69

Query: 71  AMGVIAQDISAALRQHGLAEVAIRTQLAPAWNTDWMSEKGRRNLQQYGIAPPAQQVVDIR 130
           AMGVIA+DI+  L++ GLA+VAIR QLAPAW+TDWMSEKGR NL+QYGIAPPAQQV+DIR
Sbjct: 70  AMGVIAEDITTVLQEKGLAQVAIRIQLAPAWSTDWMSEKGRHNLRQYGIAPPAQQVIDIR 129

Query: 131 GISLRRQAAPQVQCPHCGSMQTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 182
           GI L+  AA QV CPHCGS +TVCVSQFGSTSCKALYQCKDCREPFDYFKAH
Sbjct: 130 GIQLKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 524,479
Number of extensions: 18255
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)