BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0178.p
         (83 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313426|ref|YP_003777518.1| [4Fe-4S]-type ferredoxin [Herba...   170   2e-44
gi|300312177|ref|YP_003776269.1| ferredoxin [Herbaspirillum sero...    68   1e-13

>gi|300313426|ref|YP_003777518.1| [4Fe-4S]-type ferredoxin
          [Herbaspirillum seropedicae SmR1]
          Length = 86

 Score =  170 bits (431), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/83 (98%), Positives = 83/83 (100%)

Query: 1  MITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIPFNP 60
          MITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIPFNP
Sbjct: 4  MITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIPFNP 63

Query: 61 AWRESREQLMDKYERLQAEAKRS 83
          AWRESREQLM+KYERLQAEAKRS
Sbjct: 64 AWRESREQLMEKYERLQAEAKRS 86


>gi|300312177|ref|YP_003776269.1| ferredoxin [Herbaspirillum
          seropedicae SmR1]
          Length = 72

 Score = 68.2 bits (165), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 36/53 (67%)

Query: 1  MITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPV 53
          ++   C  C  CEPECPN AI     I+ IDP KCTEC+GHF+EPQC  VCPV
Sbjct: 5  IVASQCTGCSACEPECPNVAIREKNGIFVIDPKKCTECMGHFDEPQCVAVCPV 57


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 247,552
Number of extensions: 7686
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 83
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 29
Effective length of database: 1,364,180
Effective search space: 39561220
Effective search space used: 39561220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)