BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0170.p
         (329 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313432|ref|YP_003777524.1| signal recognition particle GTP...   587   e-169
gi|300309714|ref|YP_003773806.1| signal recognition particle sub...   129   4e-31

>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase
           involved in cell division protein [Herbaspirillum
           seropedicae SmR1]
          Length = 321

 Score =  587 bits (1514), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 301/314 (95%), Positives = 304/314 (96%)

Query: 16  AEEVEIVAAPELAPEVKRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELESALLVSD 75
           AEE EIV AP  APE KRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELESALLVSD
Sbjct: 8   AEEAEIVPAPAPAPEAKRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELESALLVSD 67

Query: 76  AGVEATQWLLAELKKKVKNERLTEAAQVRTALRALLIDLLQPLQRPLVLGRDKPLVMMIA 135
           AGVEATQWLL ELKKKVK ERLTEAAQVRTALR LLI+LLQPLQRPLVLGRDKPLVMMIA
Sbjct: 68  AGVEATQWLLDELKKKVKAERLTEAAQVRTALRTLLIELLQPLQRPLVLGRDKPLVMMIA 127

Query: 136 GVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESGDP 195
           GVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESGDP
Sbjct: 128 GVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESGDP 187

Query: 196 AAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIAKAMNSAPHEVLLVID 255
           AAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVI KAM+SAPHEVLLVID
Sbjct: 188 AAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLVID 247

Query: 256 GNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEKIEDL 315
           GNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGE+IEDL
Sbjct: 248 GNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDL 307

Query: 316 QPFNATEFVDALLS 329
           Q FNATEFVDALLS
Sbjct: 308 QAFNATEFVDALLS 321


>gi|300309714|ref|YP_003773806.1| signal recognition particle
           subunit SRP54 protein [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 151/286 (52%), Gaps = 20/286 (6%)

Query: 57  ARIDE----DLYEELESALLVSDAGVEATQWLLAELKKKVKNERLTEA--------AQVR 104
           AR+ E    ++  E+  ALL +D  + A +  +A++K+K   E +  +          V+
Sbjct: 20  ARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKALGEEVIGSLTPGQALVGVVQ 79

Query: 105 TALRALLIDLLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLALHL-QAHGQSVLLA 163
             L +L+   L P    L      P ++++AG+ GAGKTTT+GKLA +L +   + VL  
Sbjct: 80  RELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTTVGKLAKYLRETTKKKVLTV 139

Query: 164 AGDTFRAAAREQL-AVWGERNNVQVIAQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRL 222
           + D +R AA  QL  V G+       +Q +  P  +A  ++  A+     V++VDTAGRL
Sbjct: 140 SADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAALDYAKKHHHEVLIVDTAGRL 199

Query: 223 PTQLHLMDELKKIKRVIAKAMNSAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTK 282
                +MDE++ +   I       P E L V+D   GQ+A+   KAF DAL LTG+V+TK
Sbjct: 200 GIDQAMMDEIRAVHAAIK------PIETLFVVDAMLGQDAINTAKAFSDALPLTGVVLTK 253

Query: 283 LDGTAKGGILAAIAKTRPVPLYFIGVGEKIEDLQPFNATEFVDALL 328
           LDG ++GG   ++      P+ F GV EK++ L+ F+ +   + +L
Sbjct: 254 LDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRIL 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 920,395
Number of extensions: 39021
Number of successful extensions: 274
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 3
Length of query: 329
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,212,660
Effective search space: 294676380
Effective search space used: 294676380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)