BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0167.p
         (408 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313435|ref|YP_003777527.1| hypothetical protein Hsero_4149...   416   e-117

>gi|300313435|ref|YP_003777527.1| hypothetical protein Hsero_4149
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  416 bits (1068), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/313 (63%), Positives = 238/313 (76%)

Query: 96  MLKHLTAPRLSTLRQFFLTTSYQDTLGCYAWNQAVAAGLLPLLGDVEVSLRNALHGALSR 155
           M KH + PRL+ L  FF+TTS++D LGCYAWNQAV+AG LPLL DVEVSLRNALH ALS+
Sbjct: 1   MQKHFSTPRLAALDSFFVTTSHRDALGCYAWNQAVSAGFLPLLADVEVSLRNALHRALSQ 60

Query: 156 HYGAAESFGWMMPRPNPAHAINPAAPAVLPPLHKLSPKSRADVICAMEKVMGRKPSSYIV 215
           ++ A +S  WMMPRPNPAH INPAAP  LPP+HKL+PK+R DV+ AM K+  RKP+ Y+V
Sbjct: 61  YFHAVDSSDWMMPRPNPAHGINPAAPVQLPPVHKLTPKAREDVVSAMGKIKARKPAGYLV 120

Query: 216 TPDDVVAALPFGFWEVLISGLAHRAQPAGLQAAILAEVFPHAPDIALFAHDSPEFRKRVV 275
           +PDDVVAALPFGFWEVLI+GLAHR+QP GLQAAILA  FP+A D A   + S +FR R+V
Sbjct: 121 SPDDVVAALPFGFWEVLIAGLAHRSQPPGLQAAILAAAFPYAADTATTPYGSQDFRMRLV 180

Query: 276 TLLKRIRDVRNRIGHHDALWNLPEFDRLGVLGFIPRRPRHTVNSLRRLVDHLSWFAGWID 335
            LLKRIRD+RNRIGHH+ALW+ PEF+  GVLG IPRRPRHTVNSLR+  + LSWF GWID
Sbjct: 181 KLLKRIRDIRNRIGHHEALWSTPEFNVFGVLGHIPRRPRHTVNSLRKFAEKLSWFGGWID 240

Query: 336 PVISLHLRQSDHWWSLQVLLDRHALAIYRRTGGRAGSYRLVLAQARVPCEPLVKRRRGSR 395
           P IS +++ +DHWWSLQVLL R ALA YR  GG  G+YR +L   R P    +   R   
Sbjct: 241 PGISAYMQNNDHWWSLQVLLQRQALATYRVLGGAVGTYRRLLEATRTPANGTMPTLRTRH 300

Query: 396 QSVASPFWDRYFF 408
           +       DRY+F
Sbjct: 301 KRHKRRIVDRYYF 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,310,330
Number of extensions: 55030
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,207,925
Effective search space: 387743925
Effective search space used: 387743925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)