BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0163.p
         (378 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313439|ref|YP_003777531.1| heme O oxygenase (cytochrome aa...   682   0.0  

>gi|300313439|ref|YP_003777531.1| heme O oxygenase (cytochrome
           aa3-controlling) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 378

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/378 (92%), Positives = 362/378 (95%)

Query: 1   MNATTLIQLGLTGLVVALIPLALVWRAQGVANKYRKLVWVTLFFTFDLIMFGAFTRLTDS 60
           M AT LIQLGLTGLVVALIPLA+VWRAQG ANKYRKLVWVTLFFTFDLIMFGAFTRLTDS
Sbjct: 1   MTATMLIQLGLTGLVVALIPLAVVWRAQGAANKYRKLVWVTLFFTFDLIMFGAFTRLTDS 60

Query: 61  GLGCPDWPGCYSHANPLLAHEHINAAQEAMPFGPVTWAKAWIEMIHRYFAMAVGFLIIVL 120
           GLGCPDWPGCYSHANPLLAHEHINAAQEAMP GPVTWAKAWIEM HRYFAMAVGFLIIVL
Sbjct: 61  GLGCPDWPGCYSHANPLLAHEHINAAQEAMPTGPVTWAKAWIEMTHRYFAMAVGFLIIVL 120

Query: 121 MVAAWRRWIKSGKTELQFRPWFPTALLGFVCLQGAFGAWTVTMKLQPIIVTIHLLLGLTL 180
           MVAAW RWI+SGKTELQFRPWFPTALLGFVCLQGAFGAWTVTMKLQPIIVT+HLLLGL L
Sbjct: 121 MVAAWWRWIRSGKTELQFRPWFPTALLGFVCLQGAFGAWTVTMKLQPIIVTLHLLLGLNL 180

Query: 181 LAMLAWLGARQEQHMPVSPAGRALIVPATIGAALLGLQIALGGWVSTNYAALACSDFPLC 240
           LAML WL ARQE H+PVSPAGRALIVPAT+GAALLGLQIALGGWVSTNYAALAC+DFPLC
Sbjct: 181 LAMLTWLAARQEPHLPVSPAGRALIVPATLGAALLGLQIALGGWVSTNYAALACTDFPLC 240

Query: 241 NGQLVPEMDFEHGFTLWRHLGMTSAGDYLPVEALTAIHWVHRSFAFVVILYVVWLAHRAL 300
           +G+LVP+MDF HGFTLWRHLGMTS GDYLP +ALTAIHWVHRSFAFVVILYVVWLAHRAL
Sbjct: 241 DGKLVPDMDFAHGFTLWRHLGMTSGGDYLPFQALTAIHWVHRSFAFVVILYVVWLAHRAL 300

Query: 301 RDEGLRKTARWMLTVLGLQLCTGLATIYLNWPLAIAVIHNGGAALLVILMVMLNYKVRYA 360
           R+EGLRKT RW+LTVLGLQLCTGLATIYLNWPLAIAV+HNGGAALLVILMVMLNYKVRYA
Sbjct: 301 REEGLRKTGRWLLTVLGLQLCTGLATIYLNWPLAIAVVHNGGAALLVILMVMLNYKVRYA 360

Query: 361 PSGLAAAAPPASARPVTP 378
           PSG A AAPPA+ARPVTP
Sbjct: 361 PSGQAIAAPPATARPVTP 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,129,199
Number of extensions: 45261
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,207,925
Effective search space: 351506175
Effective search space used: 351506175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)