BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0161.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313441|ref|YP_003777533.1| transmembrane cytochrome oxidas...   376   e-106

>gi|300313441|ref|YP_003777533.1| transmembrane cytochrome oxidase
           complex biogenesis factor transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  376 bits (966), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/239 (77%), Positives = 206/239 (86%), Gaps = 2/239 (0%)

Query: 1   MPTRFVFRLIPFCATLVVAAAGIALGQWQTHRAEEKLALQQRMQARGSEAPLSALPVD-- 58
           MPTRF FR+IPFCA L+VAAAGIALGQWQTHRA+EK ALQ RMQAR +EAPLSALP D  
Sbjct: 1   MPTRFRFRIIPFCAMLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDDQ 60

Query: 59  ASDAEFRQIRLRGHYLPQWTLYLENRPYNGAVGFHVLTLFQPEGSGPAVVVARGWAPRDA 118
           +   EFRQ+ LRG ++PQWTLYLENRP+ GAVGFHVLTLF+PEGS  AVVVARGWAPRDA
Sbjct: 61  SLQDEFRQVSLRGQFIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDA 120

Query: 119 ADRTRVPQVPPPSGVTEVEGILRRDAGHVLQLGTADAPRPQAILQNLDVPALAKASGVTL 178
            DRTRVPQ PP  G TEV+G+LRRDAGHVLQLG ADAPRP AILQNLD+ ALA+ASG+ L
Sbjct: 121 VDRTRVPQSPPAQGTTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPL 180

Query: 179 APLVIEQSGAAGDTLVRDWPAPSLGIDRHRGYAVQWYALAGMALLFFIVTGFKRGRHDK 237
           +  VIEQ G   D L+RDWPAPSLGIDRHRGYAVQWYALA MA+LFFIVTGF+RGR+DK
Sbjct: 181 SGFVIEQGGDVSDGLLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRGRNDK 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 862,401
Number of extensions: 40838
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)