BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0157.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313445|ref|YP_003777537.1| cytochrome C oxidase assembly t...   340   3e-95

>gi|300313445|ref|YP_003777537.1| cytochrome C oxidase assembly
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  340 bits (873), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 164/171 (95%), Positives = 166/171 (97%)

Query: 1   MFRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKTRTITVEF 60
           M RKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDK+RTITVEF
Sbjct: 20  MLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKSRTITVEF 79

Query: 61  DGNAQGPWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIPSYAPLQSAAFFKKVE 120
           DGNAQGPWRFRPTV SMQVHPGEMTQVTYEVVNTQ RNVDAQAIPSYAP QSAAFFKKVE
Sbjct: 80  DGNAQGPWRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDAQAIPSYAPQQSAAFFKKVE 139

Query: 121 CFCFTQQTLGPNQAKQMPVVFYIDPKLPKEVTTITLSYTFFEINGKAKTAG 171
           CFCFTQQTLGPNQAKQMPVVFYIDPKLPK+VTTITLSYTFFEINGK KTAG
Sbjct: 140 CFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFEINGKDKTAG 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 479,393
Number of extensions: 17194
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)