BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0154.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313448|ref|YP_003777540.1| integral membrane protein [Herb...   201   3e-53

>gi|300313448|ref|YP_003777540.1| integral membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  201 bits (510), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 116/136 (85%)

Query: 15  WVFAVLCTVSLTVALGFTLRGAWIILVFSCIELVAVGAAMLVYARHATDREVLVLADHGL 74
           WVFA+LCTVSLTVALGFTL GAWIILVFS IE  AVGAAMLVYARHATDREV+ LAD GL
Sbjct: 21  WVFAILCTVSLTVALGFTLHGAWIILVFSFIESTAVGAAMLVYARHATDREVVRLADEGL 80

Query: 75  EVEVIQGSRSRRSSLQLHGMRIAFPVGRQSLVALESRGQRVEIGRFMSLWQRRALVQELQ 134
            VEV QGSRS RS+L   GMRI +PVGRQ+LVALESRGQRVE+GRFM+  QRR   +ELQ
Sbjct: 81  VVEVTQGSRSSRSTLHWQGMRIDYPVGRQALVALESRGQRVEVGRFMNEGQRREFARELQ 140

Query: 135 QELAARGGGVAALSFL 150
           +EL+AR G +AA+SFL
Sbjct: 141 RELSARTGAMAAVSFL 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.334    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 390,282
Number of extensions: 12514
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 126 (53.1 bits)