BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0152.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313450|ref|YP_003777542.1| amidophosphoribosyltransferase ...   360   e-101

>gi|300313450|ref|YP_003777542.1| amidophosphoribosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  360 bits (924), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/214 (87%), Positives = 199/214 (92%)

Query: 29  PRPGKPSGPGWLQRLLAHLPQLLPSSCALCGAAGRETLCAPCHKRFYTRQHRRCIQCALP 88
           P P K SGP WL+RLLA +P LLPS+CALCGA GRE LCAPCHKRFYTRQHRRCIQCA+P
Sbjct: 45  PAPKKNSGPHWLKRLLARVPPLLPSACALCGAEGREILCAPCHKRFYTRQHRRCIQCAMP 104

Query: 89  MPVTGKELRCGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIFDAT 148
           MPVTGKELRCGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLI DA+
Sbjct: 105 MPVTGKELRCGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIHDAS 164

Query: 149 RRNPVPGSDVQLPMPTLLAPVPLGLARLQERGFNQALEIARPLGKLMDIPVQPRLLERKK 208
           RRNPVPGSDV LPMP+LLAPVPLG  RLQERGFNQALEIA+PL +LM +P+QP+LLERKK
Sbjct: 165 RRNPVPGSDVALPMPSLLAPVPLGRTRLQERGFNQALEIAKPLSQLMGLPLQPQLLERKK 224

Query: 209 ETEAQSALPVGARARNVRSAFALPFAAMDQVRGL 242
           ETEAQSALPVGARARNVRSAFALPFA MDQVRGL
Sbjct: 225 ETEAQSALPVGARARNVRSAFALPFATMDQVRGL 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 673,151
Number of extensions: 28303
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)