BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0149.p
         (453 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic pro...   514   e-147
gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic pro...   393   e-110

>gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  514 bits (1323), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/262 (98%), Positives = 261/262 (99%)

Query: 1   MSYNNKLTLRAMVAALSLAAVCAAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGF 60
           MSYNNKLTLRAMVAALSLAAVC+APAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGF
Sbjct: 1   MSYNNKLTLRAMVAALSLAAVCSAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGF 60

Query: 61  EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDVIVAIATPSAQALVSATKSIPVVYSGV 120
           EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPD IVAIATPSAQALV+ATKSIPVVYSGV
Sbjct: 61  EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVAATKSIPVVYSGV 120

Query: 121 TDPVAAQLVKDWKASGTNVTGVSDLLELDKQIDLIKRVVPNAKRVGMVYNPGEANSAVVV 180
           TDPVAAQLVKDWKASGTNVTGVSDLLELDKQ+DLIKRVVPNAKRVGMVYNPGEANSAVVV
Sbjct: 121 TDPVAAQLVKDWKASGTNVTGVSDLLELDKQVDLIKRVVPNAKRVGMVYNPGEANSAVVV 180

Query: 181 KALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGND 240
           KALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGND
Sbjct: 181 KALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGND 240

Query: 241 AKIPLVASDTDSVKRGAIAALG 262
           AKIPLVASDTDSVKRGAIAALG
Sbjct: 241 AKIPLVASDTDSVKRGAIAALG 262



 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/71 (97%), Positives = 70/71 (98%)

Query: 383 GAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIASATSSKLELFVNTAAAQKQGVTLSPE 442
           GAIAALGVNYYDLGRQTGKVVGRILKGEKPGDI SATSSKLELFVNTAAAQKQGVTLSPE
Sbjct: 256 GAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIPSATSSKLELFVNTAAAQKQGVTLSPE 315

Query: 443 LVSSAKTVIKQ 453
           LV+SAKTVIKQ
Sbjct: 316 LVNSAKTVIKQ 326


>gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  393 bits (1010), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/374 (59%), Positives = 254/374 (67%), Gaps = 68/374 (18%)

Query: 8   TLRAMVAALSLAAVCAAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGFEAGKNLK 67
           +LRA+  AL+L+AVCA+ A+AA+K VAVT+ VEHPALDAVRDG KDEL   GFE GKNLK
Sbjct: 13  SLRAIAGALALSAVCAS-ALAAEKVVAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLK 71

Query: 68  WEYQSAQGNTGTAAQIARKFVGDKPDVIVAIATPSAQALVSATKSIPVVYSGVTDPVAAQ 127
           WE+QSAQ N GTA QIA+KFVGD PDVIVAI TPSAQ +V+ATK+IP+VYS + DP+AAQ
Sbjct: 72  WEFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQ 131

Query: 128 LVKDWKASGTNVTGVSDLLELDKQIDLIKRVVPNAKRVGMVYNPGEANSAVVVKALKELL 187
           LVKDWK SGTNVTG+S +L+  KQ+++I       KRV                      
Sbjct: 132 LVKDWKPSGTNVTGMSHMLDPVKQVEVI-------KRV---------------------- 162

Query: 188 AKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVA 247
                       P +  VG           V+Y   + N VSA   L      A + LV 
Sbjct: 163 -----------VPEAKRVG-----------VVYNPGEANSVSALNNLKGELQKAGLTLVE 200

Query: 248 SDTDSVKRGAIAALGKIDVMYTTTDNNVVSSLIGKIDVMYTTTDNNVVSVFESLAKVCND 307
           +          AA   +DV           SLIGKIDVMYTTTDNNVVSVFESLAKVCND
Sbjct: 201 A----------AAPRSVDVAPAA------KSLIGKIDVMYTTTDNNVVSVFESLAKVCND 244

Query: 308 AKIPLIASDTGSVKRGAVAALGVNFYDMGRQTGKVVARILKGEKAGEIASSPVKNLELYV 367
           AK+PLIASDTGSVKRGAVAALGVNFYDMGRQTGK+V RILKGEKAG+I SSPVKNLELYV
Sbjct: 245 AKLPLIASDTGSVKRGAVAALGVNFYDMGRQTGKLVVRILKGEKAGDIPSSPVKNLELYV 304

Query: 368 NTSAAQKQGVTLSP 381
           NTSAAQKQGVTLSP
Sbjct: 305 NTSAAQKQGVTLSP 318



 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 58/69 (84%)

Query: 383 GAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIASATSSKLELFVNTAAAQKQGVTLSPE 442
           GA+AALGVN+YD+GRQTGK+V RILKGEK GDI S+    LEL+VNT+AAQKQGVTLSPE
Sbjct: 260 GAVAALGVNFYDMGRQTGKLVVRILKGEKAGDIPSSPVKNLELYVNTSAAQKQGVTLSPE 319

Query: 443 LVSSAKTVI 451
            + SA  V+
Sbjct: 320 FLKSATKVL 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,237,585
Number of extensions: 51076
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 5
Length of query: 453
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,203,190
Effective search space: 439164350
Effective search space used: 439164350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)