BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0146.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313457|ref|YP_003777549.1| ADP-heptose synthase, bifunctio...   280   4e-77

>gi|300313457|ref|YP_003777549.1| ADP-heptose synthase, bifunctional
           sugar kinase/adenylyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 160

 Score =  280 bits (715), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/140 (97%), Positives = 139/140 (99%)

Query: 1   LPKPVVMTNGVFDILHRGHVTYLAQARAQGASLVVAANTDASVKRLGKGDDRPINTCEDR 60
           LPKPVVMTNGVFDILHRGHVTYLAQARAQGA+LVVA NTDASVKRLGKGDDRPINTC+DR
Sbjct: 21  LPKPVVMTNGVFDILHRGHVTYLAQARAQGAALVVAVNTDASVKRLGKGDDRPINTCDDR 80

Query: 61  MAVLAALESVSLVVPFDEDTALEAVQQARPEIYVKGGDYDMHAIPEGQAVAAYGGQVLSI 120
           MAVLAALESV+LVVPFDEDTALEAVQQARPEIYVKGGDYDMHAIPEGQAVAAYGGQVLSI
Sbjct: 81  MAVLAALESVALVVPFDEDTALEAVQQARPEIYVKGGDYDMHAIPEGQAVAAYGGQVLSI 140

Query: 121 AFEHDRSTTKLLAKVRKLAG 140
           AFEHDRSTTKLLAKVRKLAG
Sbjct: 141 AFEHDRSTTKLLAKVRKLAG 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 396,424
Number of extensions: 13614
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)