BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0141.p
         (381 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide prot...   350   1e-97
gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176...   176   3e-45

>gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  350 bits (898), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 159/221 (71%), Positives = 189/221 (85%)

Query: 157 TGKQYQTSAPPSVLLEYDVTGTKDQQPAYGRGSIAWHNEGDHYKVEGKAKALFFTLLNFT 216
           TGKQY+T APPS +L+YDVTGT DQ+P+YG  S+ W N G HY++EG+  A++ T L F+
Sbjct: 34  TGKQYRTDAPPSAVLDYDVTGTIDQKPSYGSASLDWRNSGQHYRLEGEVTAIWVTWLKFS 93

Query: 217 SVGELDAWGVSPELYTEQKGFKSATNTHFNRERNVVSFSASTTSYPRRGGEQDRASLIWQ 276
           S GELDAWGVSP LYTE+K F+SATNTHFNR  + +SFSAS T YPRRGGEQDR SLIWQ
Sbjct: 94  SEGELDAWGVSPTLYTEKKKFRSATNTHFNRNGDSISFSASETRYPRRGGEQDRGSLIWQ 153

Query: 277 LAAIGRGDPGQLQPGAVIDLFVAGVRDGEIWRVQVLGQESLTLPVGTVQTWHVVRQPKPG 336
           LAAIGRGDP Q QPGAVIDLFVAGVRDGE+WR+QV+G+E++ LP+GT+QTWHVVR PKPG
Sbjct: 154 LAAIGRGDPAQFQPGAVIDLFVAGVRDGEVWRMQVIGEEAIKLPIGTLQTWHVVRVPKPG 213

Query: 337 SYDDRVDIWLAPQHEWYPVRVRYTDLRPNGDYTQLDLSGLK 377
           +Y+DR+DIWLAPQHEWYP R+RYTD RPNGD T+L LS L+
Sbjct: 214 AYEDRIDIWLAPQHEWYPARLRYTDPRPNGDVTELSLSELR 254


>gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  176 bits (446), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 133/231 (57%), Gaps = 5/231 (2%)

Query: 151 DAPEAATGKQYQTSAPPSVLLEYDVTGTKDQQPAYGRGSIAWHNEGDHYKVEGKAKALFF 210
           D P     + Y  + PPS  L Y +   +      G+G + W      Y V  + +A+  
Sbjct: 27  DGPHPVDKRAY--NLPPSAELNYSIQAKQSGLDVKGQGLVKWTQSKTSYSVTSETRAMLL 84

Query: 211 -TLLNFTSVGELDAWGVSPELYTEQKGFKSATNTHFNRERNVVSFSASTTSYPRRGGEQD 269
             +L  TS G +DA+G++P+ + E++  +  + T FNRE+N ++F+ S  SYP +GGEQD
Sbjct: 85  GKILEATSEGAVDAYGLAPDRFVEKRLRREPSTTTFNREQNKITFTQSAESYPLQGGEQD 144

Query: 270 RASLIWQLAAIGRGDPGQLQPGAVIDLFVAGVRDGEIWRVQVLGQESLTLPVGTVQTWHV 329
           R S+ WQ  AI R +  +++PG+  + FVAG RD E W  +V+G+E +  P G  +  H+
Sbjct: 145 RTSITWQFVAIARANAAKMKPGSEWNFFVAGQRDAEQWTFKVVGREKIRTPQGETEALHL 204

Query: 330 VRQPKPGSYDDRVDIWLAPQHEWYPVRVRYTDLRPNGDYTQLDLSGLKPVD 380
            R P P     ++DIWLAP+ EWYPVR+++TD  P+GDY +  L  LK  +
Sbjct: 205 FRAPPPDDQGQKLDIWLAPKMEWYPVRLKFTD--PDGDYIEQTLDSLKKTN 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 935,841
Number of extensions: 37698
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 381
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,207,925
Effective search space: 355129950
Effective search space used: 355129950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)